Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8 170 2e-37 seq4 159 3e-34 seq3 132 4e-26 seq1 100 3e-16 >seq8 Length=2477967 Score = 170 bits (188), Expect = 2e-37 Identities = 177/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || |||||||||||||| ||||| ||||||||| Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| |||| |||||||||||| | || Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 2273197 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 2273196 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 2273147 >seq4 Length=3212107 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || || || || |||||||||||||| ||||| ||||| || Sbjct 2383133 GCCTCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 2383074 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || || ||||||||||| || |||| ||||||||||| | || Sbjct 2383073 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGG 2383014 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | | ||||||| ||||| | Sbjct 2383013 GATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTGTCGATAGTGTCGGAGGACTCGA 2382955 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 2382954 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 2382905 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || || |||||||||||||| |||||| Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | ||||||||| || || || || |||||||| |||| |||| Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| ||| | | | ||| || |||||| || Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCAATAGTATCCGACGACTCAAC 2383703 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||||| ||||| ||||| |||||||| Sbjct 2383702 CTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 109 bits (120), Expect = 5e-19 Identities = 159/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||| |||||||| ||||||||| Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| |||| ||||||||||| | || Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||| | ||| | || | ||| || | || | |||||| |||||| Sbjct 2383305 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATTGTCG--ATGGTGTCGGACGACTCG 2383249 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || || ||||| |||| Sbjct 2383248 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||||||||| || ||| ||||| ||||| ||||| Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||| || |||| || |||||||| | ||| Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | ||||| | ||| | | | ||| || ||||| | Sbjct 2383533 ATACCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAA 2383476 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| || || || || |||| ||||| || || || ||||| Sbjct 2383475 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 >seq3 Length=5106013 Score = 132 bits (146), Expect = 4e-26 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || || ||||||||||| || || | Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||||||| |||||||| | |||| || |||||||||| ||| || ||| ||| | Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-AACATTG 1582959 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| |||||||||||| | || || || || ||||| || ||||| ||| Sbjct 1582960 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 1583019 Query 41852 AAAATCTGCA 41861 || ||||||| Sbjct 1583020 AAGATCTGCA 1583029 >seq1 Length=5759619 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || |||||||||||| ||||||| |||||| ||||||||| ||| Sbjct 2737112 CGCATTGCCCCCCGCTCCGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCCGGCGTC 2737053 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | || | || | ||||||||||||| ||| Sbjct 2737052 ATCGACGCCGACTACCGCGGCCAAGTTAAGGTCCTCCTCTTCAACCACGCCGA 2737000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303820857200