Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq8 170 2e-37
seq4 159 3e-34
seq3 132 4e-26
seq1 100 3e-16
>seq8
Length=2477967
Score = 170 bits (188), Expect = 2e-37
Identities = 177/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || |||||||||||||| ||||| |||||||||
Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||||||||| |||| |||||||||||| | ||
Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 2273197
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 2273196 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 2273147
>seq4
Length=3212107
Score = 159 bits (176), Expect = 3e-34
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || |||||||| | || || || || |||||||||||||| ||||| ||||| ||
Sbjct 2383133 GCCTCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 2383074
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| || || ||||||||||| || |||| ||||||||||| | ||
Sbjct 2383073 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGG 2383014
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || |||| ||| | | | ||||||| ||||| |
Sbjct 2383013 GATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTGTCGATAGTGTCGGAGGACTCGA 2382955
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 2382954 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 2382905
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| || || || |||||||||||||| ||||||
Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || | ||||||||| || || || || |||||||| |||| ||||
Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | ||| || |||||| ||
Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCAATAGTATCCGACGACTCAAC 2383703
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || ||||| || ||||||| ||||| ||||| ||||||||
Sbjct 2383702 CTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
Score = 109 bits (120), Expect = 5e-19
Identities = 159/220 (72%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||| |||||||| |||||||||
Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| || ||||| |||| ||||||||||| | ||
Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||| | ||| | || | ||| || | || | |||||| ||||||
Sbjct 2383305 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATTGTCG--ATGGTGTCGGACGACTCG 2383249
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||||| | || || || || || || || ||||| ||||
Sbjct 2383248 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||| |||||||||| || ||| ||||| ||||| |||||
Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | |||||||||||| || |||| || |||||||| | |||
Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | ||||| | ||| | | | ||| || ||||| |
Sbjct 2383533 ATACCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAA 2383476
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | ||| || || || || |||| ||||| || || || |||||
Sbjct 2383475 CCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
>seq3
Length=5106013
Score = 132 bits (146), Expect = 4e-26
Identities = 145/190 (76%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| ||||| || | || || ||||||||||| || || |
Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||||||| |||||||| | |||| || |||||||||| ||| || ||| ||| |
Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-AACATTG 1582959
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | |||||| |||||||||||| | || || || || ||||| || ||||| |||
Sbjct 1582960 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 1583019
Query 41852 AAAATCTGCA 41861
|| |||||||
Sbjct 1583020 AAGATCTGCA 1583029
>seq1
Length=5759619
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| || || || || |||||||||||| ||||||| |||||| ||||||||| |||
Sbjct 2737112 CGCATTGCCCCCCGCTCCGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCCGGCGTC 2737053
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||||||||||||||| | || | || | ||||||||||||| |||
Sbjct 2737052 ATCGACGCCGACTACCGCGGCCAAGTTAAGGTCCTCCTCTTCAACCACGCCGA 2737000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303820857200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |