Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 1e-14 seq97 93.3 4e-14 seq146 89.7 4e-13 seq316 86.0 5e-12 >seq33 Length=265719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || ||| | || Sbjct 39217 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCC 39276 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||||||||| || || ||||| Sbjct 39277 GACACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 39336 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| ||||| ||||||| |||||| Sbjct 39337 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCCGACTACAAC 39396 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 39397 ATTCAGAAGGAGTCGAC 39413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | ||||| || | | Sbjct 38989 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 39048 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| || || || || || Sbjct 39049 GACACAATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 39108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| || ||| |||| || |||||| Sbjct 39109 CAGCGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGTACCCTCTCGGACTACAAC 39168 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 39169 ATCCAGAAGGAGTCGACTTTGCACCTGGTACTGCGTCTGCGCGGTGG 39215 >seq97 Length=191658 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || || | || ||| | ||| || |||| Sbjct 153346 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGAGC 153405 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || || |||||||| Sbjct 153406 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 153465 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| | ||||| |||||||| || || Sbjct 153466 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 153509 >seq146 Length=70891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 262/396 (66%), Gaps = 17/396 (4%) Strand=Plus/Plus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT-- 130072 ||||| |||||||| || | ||| || | ||| || ||||| |||| || || || Sbjct 30030 TCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGG 30089 Query 130073 --TTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCG 130128 ||| |||| | || || | | || | || || |||||| | | ||||||||| Sbjct 30090 ACTTCC-TCCTTG----CCGTGGTTC-TTGCGAAGATCGAGGAAACTGAAGATGTCGGCG 30143 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACG 130185 ||||| || || | || || || | || ||| || ||| || || ||||||||| Sbjct 30144 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACG 30203 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | ||| | | ||||||||||| || | ||| | ||| |||||| ||||| || Sbjct 30204 TAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGCCATTG 30263 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 |||| ||||| | || ||| || || | | ||||| | ||||| ||||| || Sbjct 30264 GTGCCAGCAATGTAGCTACCAGTGGCACGGATGCGGTGAACATTGAGACCGATGCCTCCA 30323 Query 130306 CCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTC 130364 | || || |||| ||||| || | || || ||||| || || |||| || || Sbjct 30324 GCGGTCTTGGAGATCATGGCGCAGGTCTTG-AGGGTGTCATAGATACCGTCGATGCTATC 30382 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTG 130400 || || || | | |||||| || || ||||| || Sbjct 30383 CTCCTTCATATCGATGAGGAAGCAAGACGCCAACTG 30418 >seq316 Length=54270 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| || || || || || || ||||| || || || ||||| ||| | || Sbjct 51739 AGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGA 51680 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||| ||||||| | || || |||||||| || || || |||||| | || | || | Sbjct 51679 GGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCT 51620 Query 22431 GCGATTGCGCGGAGG 22445 ||| |||| || || Sbjct 51619 GCGCCTGCGTGGTGG 51605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718336943285