Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq397 107 4e-18 seq313 96.9 7e-15 >seq397 Length=68823 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 63862 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTTAAC 63921 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||| | || || ||||| |||| ||||| || | Sbjct 63922 CAGACCCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 63981 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 63982 GGCAAGACCACCCTGATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 64040 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || || || ||||| ||| |||||||| Sbjct 64041 GTCCGAGGTCAAGACCGTCTACGTCGAGCATGACCTCGACTCC 64083 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| |||||| ||||| | ||| | | || Sbjct 65264 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTT 65323 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | |||||| ||||||| || ||||||||||||||||| || ||||| Sbjct 65324 GCTC-GTGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 65382 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || || |||||| Sbjct 65383 GACTCTCTCGGTGCTCTG 65400 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 64222 TCGCTTTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 64280 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || |||||||| ||||| ||||||||||||||| || ||||| || ||||| Sbjct 64281 CGATATTCTTCTGCTTGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 64340 Query 279821 AGTGTCCTACCT 279832 | | |||||| Sbjct 64341 CGAGAACTACCT 64352 >seq313 Length=63811 Score = 96.9 bits (106), Expect = 7e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| |||| ||||| || |||||||| || ||||| |||||||||||||| | || Sbjct 31870 ATTGGTGCCAACGGTGCTGGCAAGTCTACGCTCATCAAGGTCCTGACTGGCGA-AGTCAT 31812 Query 280236 GCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || | | || | | | |||||| || ||| |||| || | |||| || ||||| Sbjct 31811 TCCGCAAACTGGCAAGGTCGAGAAGCACCCTAACCTGCGTATTGGTTACATCAAGCAGCA 31752 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||| | | ||| |||||| ||| |||| | ||| || ||||| ||| | |||||||| Sbjct 31751 TGCTCTTGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTACTTGCAGTGGCG 31692 Query 280355 CTATGCAAGTGG 280366 || || | ||| Sbjct 31691 TTACGCTAATGG 31680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027811923458649