Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq694 165 1e-34 seq1252 149 9e-30 seq146 114 2e-19 seq45 87.8 3e-11 >seq694 Length=40397 Score = 165 bits (182), Expect = 1e-34 Identities = 192/254 (76%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581 ||||||| ||||||| ||||| |||||||| ||||| | | || ||||||| || || Sbjct 8999 GATCATCATCGAGGCTGTCGATATCGAGAAGGAGTTCCTGACGGATGCGCTGCCTGTCGC 8940 Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 || |||||||||| ||||| |||||||||||||||||| || || ||||| |||||| Sbjct 8939 TCTTCTCGGCATGAATGCCAC-GCTCATGTGCCAGTACATCGAGTTC-GTCGCTGACCGC 8882 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 ||| | | |||||||||| | ||||| ||||| | ||||||| ||| | || Sbjct 8881 CTGTTGGTGGCGCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 8823 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760 |||| || |||||| |||||||||||||| |||||| || | ||| || ||| Sbjct 8822 GGAGAACATTTCGCTCAGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 8763 Query 1456761 CAAGGCCGGCGTCA 1456774 ||||| ||||||| Sbjct 8762 GAAGGCTGGCGTCA 8749 Score = 163 bits (180), Expect = 4e-34 Identities = 211/288 (73%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| || |||||| | |||| Sbjct 9661 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGACC 9603 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || | | ||||||||||||| |||||| Sbjct 9602 TCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCT 9543 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| |||||||| || |||||| |||||||||||| ||||||||| | || Sbjct 9542 CCCACGTTCTCGCCTTCTT-CGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGAG 9484 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 9483 CGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 9424 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 9423 ATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 9376 Score = 93.3 bits (102), Expect = 6e-13 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Minus Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| || |||||| ||||| | |||||| ||| || || Sbjct 9256 AAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTCGCATCGC 9202 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || | | ||| ||||| |||||||| ||||| ||| ||| ||| | |||||| Sbjct 9201 GTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCT 9142 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||||||||||||||| |||||||||||||| Sbjct 9141 TCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 9108 >seq1252 Length=4266 Score = 149 bits (164), Expect = 9e-30 Identities = 353/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 1600259 TCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGTG 1600318 |||||||| || ||||||| |||||| ||| |||||||||||| || || |||| Sbjct 949 TCCATCTCGCCGAGGCGGAGGCCGCCGTCGCGGGAGCGGCCCTCGGTGGGTTGGCGGGTG 1008 Query 1600319 AGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAGG 1600378 || || | ||||||||| | || | ||| |||||||| ||| ||| || Sbjct 1009 AGGATGGCGCGGGGGCCGCGCGCGCGAGAGTGCATCTTGTCTTGTACCATGTGCTTGAGC 1068 Query 1600379 GCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTG-TGCG 1600436 ||||||||||| || |||| | |||| | || || | |||||| ||| ||| Sbjct 1069 TTCTGGTAGTAGATGGG-GCCGAAGAAGACGTAGGCTGGCAGCGACTCGCCCGTGATGCC 1127 Query 1600437 GGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGG--CGGC 1600494 | || ||||| |||||||| || | | | || || | | | || | || Sbjct 1128 CGACGT-GAGCATGTCCTTGCCCGAGTACGAGAAGCC----CGCCTCGAGTAGGATCTGC 1182 Query 1600495 GACAT--CGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGG 1600552 ||||| | ||| | || |||||| ||| |||||||| || | ||| || Sbjct 1183 GACATGTCCTCGGCCTTGCTGCCGCCGAAGCACGTGCCGTACTGCAGGTCGCCGCCGACT 1242 Query 1600553 CAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATG 1600612 | || |||||||| || ||||| ||||||||||| |||||||||||||||| Sbjct 1243 ACGCCCGCCTTGCCCGACAGCAGCTCCAGCATCTTGCCCACCGTCATGCGCGACGGGAAT 1302 Query 1600613 GCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCC 1600672 |||||||||| || | ||||| || | | || | | | || | ||||||||| Sbjct 1303 CCGTGCGGGTTCATGATGATGTCCGG-GCAGATCCCCTGGTCGTTGA--ACGGCATGTCC 1359 Query 1600673 -TCGGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTC 1600731 || | |||| | | |||| ||| ||||||||| |||||||| ||||| | ||||| Sbjct 1360 GTCTGCTCAGCG-ATGATGCCGACGACGCCCTTTTGCCCGTGGCGGGACGAGAACTTGTC 1418 Query 1600732 GCCCACCTCGGGCTGGCGCATGGCCCGCGTGACGATCTTGA 1600772 ||||| ||||||| ||||| | |||||| |||||||| Sbjct 1419 GCCCAGCTCGGGCCGGCGCGTTTGCCGCGTCTGGATCTTGA 1459 >seq146 Length=70891 Score = 114 bits (126), Expect = 2e-19 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024 |||| ||||| || | || ||||||| ||| ||||| || ||||||||||| |||| Sbjct 30411 CGTCTTGCTTCCTCATCGATATGAAGGAGGATAGCATCGACGGTATCTATGACACCCTCA 30352 Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084 || ||||| | ||||||||| | || || ||||||||| | | ||| | | Sbjct 30351 AGACCTGCGCCATGATCTCCAAGACCGCTGGAGGCATCGGTCTCAATGTTCACCGCATCC 30292 Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144 | ||| | || |||| | || |||||||| ||| ||||||| | | ||||||| Sbjct 30291 GTGCCACTGGTAGCTACATTGCTGGCACCAATGGCACTAGCAACGGCTTGATTCCCATGC 30232 Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||| | ||| |||| || |||||||| |||||| Sbjct 30231 TTCGCGTCTACAACAACACTGCACGCTACGTTGACCAG 30194 Score = 111 bits (122), Expect = 2e-18 Identities = 351/539 (65%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||||| || ||| | || ||||| ||| | |||||||| ||||| Sbjct 29320 TGGGACTGGGACAGCGTGAAGGCTGAGATTGCTCAGCACGGCATCCGCAACTCTCTGCTC 29261 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 || || | ||||||||| || |||| |||||||| ||| || |||| |||||| Sbjct 29260 GTCGCACCCATGCCCACCGCGTCGACCAGTCAGATCCTCGGCTTCAACGAGTGTTTCGAG 29201 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||| ||||||||| | ||||| ||||| | ||||| || || |||||| Sbjct 29200 CCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAGTTCCAGGTCGTCAAC 29141 Query 263059 CGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCGG 263118 | | || ||||| | |||| | | |||||||||| | | | |||| Sbjct 29140 CCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCTGATCAGATGAAGAACCGC 29081 Query 263119 CTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCTC 263178 |||| || | | || || | ||| | | || | ||| | || || Sbjct 29080 ATCATCGCTTCCAACGGTTCCATCCAGCAGATCCCCAACAT-----TCCCGAC-GACATC 29027 Query 263179 AAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGCG 263235 ||||| |||| |||||| || |||||| | | | || ||||| | | ||||| Sbjct 29026 AAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGC---ACCATCGTCCAGATGGCT 28970 Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295 ||||| || | ||| | |||||| ||| ||||||||| | || | ||||| Sbjct 28969 GCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCACATGAAAGACCCT 28910 Query 263296 ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 ||| | | ||||||||||||||| || ||| | ||| |||||||||||| Sbjct 28909 ACGATGGGCAAGATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 28850 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGATCAGG 263413 |||||||| || || || | | |||| | | |||| || || ||||| ||||| |||| Sbjct 28849 ATGTACTACCTCCGTACGCAGGCCGCCG-CTGCGCCAATCCAGTTCACTGTCGACCAGG 28792 >seq45 Length=123466 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 1571189 GCAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCT 1571248 ||||||||| || | ||||||||||| ||| |||||||||| ||||||| | |||| Sbjct 118779 GCAGGTGCCGCTCATCCTGGCGTGGGCGCTGAGCATCCACAAGGCCCAGGGCCAGACGCT 118838 Query 1571249 GGACCGGGCCGTC-ATCTCGA--TGAGCGGCATCTTTGACTGTGGCCAGGCCTACGTGGC 1571305 ||| || |||| | |||| | || || |||| || |||||||| |||||||| Sbjct 118839 GGAGCG---CGTCAAGGTCGACCTCGGCCGCGTCTTCGAGAAGGGCCAGGCGTACGTGGC 118895 Query 1571306 GCTGTCGCGC 1571315 |||||||||| Sbjct 118896 GCTGTCGCGC 118905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177629002478018