Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq33 118 3e-21 seq594 96.9 1e-14 >seq33 Length=265719 Score = 118 bits (130), Expect = 3e-21 Identities = 272/407 (67%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || ||||| || || ||||| | || |||| ||| | |||||| | || | Sbjct 23203 CCTGAGGAAATCTCTTCCATGGTCCTGACCAAGATGAGGGAGACTGCTGAGTCGTACCTT 23262 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | |||||| |||| || || ||||| || || || |||||||| Sbjct 23263 GGTGGCACCGTCAACAACGCTGTTGTTACCGTCCCCGCCTACTTCAACGACTCCCAGCGT 23322 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||| || || | || || || | || || || || Sbjct 23323 CAGGCTACCAAGGATGCCGGTCTCATCGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 23382 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || ||||| || | | | || || | Sbjct 23383 CCTACTGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGGCTACTGGTGAGCGCAACGTC 23442 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || ||| | || ||||||||||| ||||| || || || || |||| || || Sbjct 23443 ATGATCTTCGATCTTGGCGGTGGTACTTTCGATGTTTCCCTCCTCACCATTGAGGAAGGT 23502 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | ||||| || ||||| || || ||||| || || || || || Sbjct 23503 ATCTTCGAGGTCAAGTCCACTGCCGGCGATACTCACCTGGGTGGTGAGGACTTCGACAAC 23562 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAA 349937 ||||| || || || ||||| ||||| || || ||||| ||||| Sbjct 23563 CGTCTTGTCAACCACTTCGTTAACGAATTCAAACG-CAAGCATAAAA 23608 Score = 111 bits (122), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || |||||||| ||||| || || || || | Sbjct 38995 TTTGCATACCACCACGGAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGT 38936 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| ||||| | || ||||| | Sbjct 38935 AGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 38876 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || || || ||||| |||||||| || || ||| || || || || |||| || || Sbjct 38875 CCGGGGGGATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATCGTGTCTGAG 38817 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || || ||||| || | ||||| || || | ||| Sbjct 38816 GACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGT 38779 >seq594 Length=21069 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||| || || |||||||| || Sbjct 16090 CGCGGGACACCAAGCGTGACGTTC---TTCGAAGACACACCGGCGAAATGGAAAGTGTTC 16034 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || || | |||||||||||| |||||||| |||| || |||||||||||| Sbjct 16033 AGAGTCATCTGCGTTGCGGGCTCACCAATGGACTGCGCGGCAAGCACACCAACCATTTCT 15974 Query 377578 CCAGGATTGACAATAGC 377594 || ||| |||| || || Sbjct 15973 CCGGGACTGACGATCGC 15957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515217726581867