Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq146 183 3e-41 >seq146 Length=70891 Score = 183 bits (202), Expect = 3e-41 Identities = 341/492 (69%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||||||||||| || | |||||| || || |||||||| | | |||||| Sbjct 30445 CTGTTCAACGCTGGAACCCCCAAGCCTCAGTTGGCGTCTTGCTTCCTCATCGATATGAAG 30386 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || || |||||||| ||||| || || |||||| || ||| ||||||||| Sbjct 30385 GAGGATAGCATCGACGGTATCTATGACACCCTCAAGACCTGCGCCATGATCTCCAAGACC 30326 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || || |||||| || | || || | || ||||||| | || | || | Sbjct 30325 GCTGGAGGCATCGGTCTCAA-TGTTC-ACCGCATCCGTGCCACTGGTAGCTACATTGCTG 30268 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || || ||| | | || | | || ||||| ||||||| ||||||||| || | Sbjct 30267 GCACCAATGGCACTAGCAACGGCTTGATTCCCATGCTTCGCGTCTACAACAACACTGCAC 30208 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| |||||||||| ||||| ||| | |||||||||||||||||||| | Sbjct 30207 GCTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCTCGAGCCAT 30148 Query 53592 GGCACGCCGACATTATGGAGTTTC-TCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||||| | |||||| |||| || || ||| || || | || || | Sbjct 30147 GGCACGCCGACATCTTC-AGTTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAAGTC 30089 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || || |||||||| ||| ||||| |||||||| || ||||||||| || || || Sbjct 30088 CGGGCTCGCGACCTGTTCTAC-GCTCTCTGGATTCCTGATCTCTTCATGAAACGTGTCGA 30030 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || ||| ||| ||| |||||||| ||||||||||| || || | ||| || Sbjct 30029 GCAGAACGGCACCTGGACCCTTATGTGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTTA 29970 Query 53770 CGGTGAGGAGTT 53781 || || ||||| Sbjct 29969 TGGAGACGAGTT 29958 Score = 140 bits (154), Expect = 4e-28 Identities = 309/456 (68%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||||| || || ||||| ||||||||||| ||||||| | Sbjct 29281 GGCATCCGCAACTCTCTGCTCGTCGCACCCATGCCCACCGCGTCGACCAGTCAGATCCTC 29222 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||| ||||||||||||||| | ||||||||| ||||| || || Sbjct 29221 GGCTTCAACGAGTGTTTCGAGCCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCT 29162 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || |||| || | || ||| | | ||| |||||||| || | || | | Sbjct 29161 GGCGAGT---TCCAGGTCGTCAACCCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTG 29105 Query 55655 TGGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTC---CAGAAT 55708 ||| ||||| |||| || || || | ||| || ||| || |||| Sbjct 29104 TGGTCTGATCAGATGAAGAACCGCATCATCGCTTCCAAC---GGTTCCATCCAGCAGATC 29048 Query 55709 CTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAA 55767 | | ||||| | || | |||||| | | ||| |||||| |||||| || | ||| Sbjct 29047 CCCAACATTCC-CGACGACATCAAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCG 28989 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 | | | | ||| ||| ||||| ||||| | ||| ||||||||||| || || || Sbjct 28988 CACCATCGTCCAGATGGCTGCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAA 28929 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 |||| |||| | | ||| | ||| |||| | | |||||||||||| || ||||| Sbjct 28928 CATCCACATGAAAGACCCTACGATGGGCAAGATCACGTCGATGCACTTTGCTGGCTGGAA 28869 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | || |||||||| || |||||||| || || || Sbjct 28868 GCTCGGTCTCAAGACTGGCATGTACTACCTCCGTAC 28833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203078862200