Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq146 181 1e-40 seq33 167 3e-36 seq97 122 1e-22 seq316 116 4e-21 >seq146 Length=70891 Score = 181 bits (200), Expect = 1e-40 Identities = 577/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||||| |||||||| || || ||| ||| ||| |||||||| || Sbjct 29342 CCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGACTGCCCTGGAAGGTCTCGTAGGG 29401 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || | |||||| || ||| ||| | | | || || || || ||| ||| || Sbjct 29402 ACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATGGATGCATGGTAGATGGTCTCGAA 29461 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 | |||| | | || | ||| ||| ||||| | || || | || || Sbjct 29462 AATCTGGATGTTGAG-CTGCTTGGCCTCAGGGGAATCGAAAGGCATGCGAAGAGCCAGGA 29520 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | || || || || | || || | ||||| |||||||| ||| |||| | || | Sbjct 29521 AGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGGTGACGCATGTT-GCTCTTT 29579 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | |||||| || | ||||| ||| | ||||||| ||||| ||| | Sbjct 29580 CTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAGC 29639 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCCC---TTCACAAAT 80892 ||| | ||||| || ||||| |||| |||||| | |||| | || || || Sbjct 29640 ACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCGTTCTCAACGTTGACGAAG 29699 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | ||| || ||| || |||| ||||| || || ||||| |||| | || ||||| Sbjct 29700 GTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCG 29759 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| || ||| | || || || ||||| ||||| || ||||| |||| Sbjct 29760 ACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTG 29819 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| |||||||| |||| | || |||||||||||||||| | || ||| Sbjct 29820 CGGTTGCAGTGATCCTTGTACAGCATGAAGGGATTACCGGTCTCGACCTGGGCCTCGAGA 29879 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||| | || | || ||| || ||| || || | ||||| Sbjct 29880 ATGGCGTACCAGAGCTTCTGAGCGCGGACGGTCTCACGGCCACGACCCTCCTTCTCATAC 29939 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | ||||| | ||||||| | | || | || || | || | ||||||||||| Sbjct 29940 TGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTG 29999 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| ||| |||| |||| ||| ||| |||||||| ||||| Sbjct 30000 GGGCACATAAGGGTCCA---GGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGA 30056 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGC 81307 |||||||| ||| |||||||||||| ||| || | ||||| | || ||||| || Sbjct 30057 ATCCAGAGAGCGTAGAACAGGTCGCG--AGCCCGGACTTCCTCCTTGCCGTGGTTCTTGC 30114 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366 | | ||||| || | |||||| || ||||||||||| || || | ||||| | || Sbjct 30115 GAAGATCGAGGAAACTGAAGATGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCAC 30174 Query 81367 CC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 || |||| ||||||||||| ||||| || ||||| Sbjct 30175 CCGGACGCTTG---TTGCCACCCTGGTCAACGTAGCGTGCAGT 30214 >seq33 Length=265719 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || | || || |||||| Sbjct 38989 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 39048 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || || ||||||||||| || || || |||||| Sbjct 39049 GACACAATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 39108 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||||||| || ||||| | ||||||||| | ||||| || Sbjct 39109 CAGCGTCTGATCTTCGCGGGTAAGCAGCTGGAGGACGGTCGTACCCTCTCGGACTACAAC 39168 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | || || || ||||||| |||||||| Sbjct 39169 ATCCAGAAGGAGTCGACTTTGCACCTGGTACTGCGTCTGCGCGGTGG 39215 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 38502 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 38561 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| ||||||||||| | || || ||||| ||| Sbjct 38562 AAGATCCAGGATAAGGAAGGCATTCCTCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 38621 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| |||||||| | ||||| || |||| ||||| ||||| |||||| Sbjct 38622 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 38681 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 38682 CTCGTCCTCCGCCTCCGCGGTGG 38704 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || |||||||| || || |||||||| || Sbjct 39217 ATGCAGATCTTCGTCAAGACCCTGACTGGAAAGACTATCACGCTCGAGGTTGAATCTTCC 39276 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| || || || || ||| Sbjct 39277 GACACGATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCGCCGGATCAG 39336 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || ||||| | || || || | ||||| || Sbjct 39337 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGCACGCTCTCCGACTACAAC 39396 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || ||||| || | || | ||||| || ||||| || Sbjct 39397 ATTCAGAAGGAGTCGACTCTGCACTTGGTGCTTCGTCTGCGTGGTGGCCA 39446 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | || | || | ||| Sbjct 38785 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACGATCGACAACGTCAAGAGC 38844 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || || || || ||||||||||| | || || ||||| ||| Sbjct 38845 AAGATCCAGGATAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 38904 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| |||||||| | ||||| || |||| ||||| ||||||||||| Sbjct 38905 CAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTTCAC 38964 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 38965 CTCGTCCTCCGCCTCCGTGGTGG 38987 >seq97 Length=191658 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 153330 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 153389 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| || || |||||||||||||| ||||| || ||||||||||| || Sbjct 153390 CGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 153449 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| || ||||||| || ||||| | ||||| || |||| || Sbjct 153450 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 153509 Query 27594 GG 27595 || Sbjct 153510 GG 153511 >seq316 Length=54270 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 51738 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 51679 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| ||||| ||||| || || || Sbjct 51678 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 51619 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 51618 CGCCTGCGTGGTGG 51605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296933545680