Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20sapinea_20[genbank_20GCA_5F000729945.1_202014-07-16] 1,889 sequences; 35,241,951 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq33 158 3e-33 seq97 152 1e-31 seq316 107 4e-18 seq146 107 4e-18 >seq33 Length=265719 Score = 158 bits (174), Expect = 3e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 38689 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCC 38630 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| |||||||| ||| Sbjct 38629 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATGCCTTCCTTATCC 38570 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 38569 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 38510 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 38509 TTGCCGGTGA 38500 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 38972 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCC 38913 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | |||||||| ||| Sbjct 38912 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTATCC 38853 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || ||||| || ||||| ||| Sbjct 38852 TGGATCTTGCTCTTGACGTTGTCGATCGTGTCTGAGGACTCGACCTCAAGGGTGATGGTC 38793 Query 211083 TTTCCCGT 211090 || || || Sbjct 38792 TTGCCAGT 38785 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || ||||| || || | || || | || || Sbjct 39428 AGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGCCCGTCC 39369 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || || || || || | || ||||||||| Sbjct 39368 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCC 39309 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| ||||| || |||||||||||| ||||| ||| Sbjct 39308 TGAATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGATAGTC 39249 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | |||||| Sbjct 39248 TTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 39217 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||| ||||| || |||||||| || |||| ||||| | || || Sbjct 39200 AGTACCAGGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCC 39141 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 39140 TCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 39081 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| || || || || | ||||| ||| Sbjct 39080 TGGATCTTGGACTTAACATTGTCGATTGTGTCCGATGACTCGACTTCCAAGGTGATGGTC 39021 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 39020 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 38989 >seq97 Length=191658 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 153509 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 153450 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 153449 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 153390 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 153389 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 153331 >seq316 Length=54270 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || |||||||| || |||| |||||| | ||||| Sbjct 51620 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 51679 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 51680 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 51738 >seq146 Length=70891 Score = 107 bits (118), Expect = 4e-18 Identities = 194/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||||||||||||||| | |||| || ||| |||||| |||||||| Sbjct 29796 CCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAG-TG--ATCCTTGTACAGCATGAAGGGA 29852 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | || ||| |||||||| | ||| |||| ||| || ||||| ||| Sbjct 29853 TTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGCTTCTGAGCGCGGACGGTC 29912 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | | || || ||||| |||| | ||| || ||||||| || |||||| Sbjct 29913 TCACGGCCACGACCCTCCTTCTCATACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAA 29972 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| | || || || ||| |||||||| | || |||| |||| | || Sbjct 29973 ACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGGTGCCGTTCTGCTCG 30032 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || |||||||||||||| |||| |||||| || ||||| Sbjct 30033 ACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 30073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159123945261485