Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq794 224 1e-53 seq415 140 3e-28 seq213 138 1e-27 seq2834 123 3e-23 >seq794 Length=14906 Score = 224 bits (248), Expect = 1e-53 Identities = 227/292 (78%), Gaps = 5/292 (2%) Strand=Plus/Plus Query 116630 CCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 ||| | || |||| |||||||| ||||||||||| || |||||||| | |||||| | Sbjct 4816 CCGCAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATT 4875 Query 116690 GACCTGTCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTC 116746 ||||| ||||||||| ||||||| | |||| | |||||| |||||||| ||| Sbjct 4876 GACCTCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTC 4935 Query 116747 ATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC 116806 ||| ||||| || ||||| |||||||| || |||||||| |||||||| || ||| Sbjct 4936 ATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTC 4995 Query 116807 GAGCGTTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||||| ||| |||| | |||| ||| | ||||||| || |||||||||||||| ||||| Sbjct 4996 GAGCGCTTCAGCTCCG-AGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 5054 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 | ||||||||| | |||||||| | || ||| |||||||||||||||| Sbjct 5055 CATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 5106 Score = 219 bits (242), Expect = 4e-52 Identities = 323/452 (71%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 || ||| |||| ||||||||| ||||| |||||||||||| || || ||| || | Sbjct 5211 CCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACA-AGAACTCGAC 5269 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| ||| ||| | |||||||| ||||||||||| ||||||| ||| || Sbjct 5270 CTTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTT 5329 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 |||| |||| || ||||||||||| ||||| ||||||||||| || || ||| |||||| Sbjct 5330 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGA 5389 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 |||||| ||| | || ||||| |||| |||||||||||| |||||||| ||| | Sbjct 5390 GCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACAT 5449 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | | || ||| | | | || | |||| ||| ||| || |||| ||||| Sbjct 5450 CAAGTCGAAGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATCGA 5509 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 | || ||||| || || |||||||| || ||| || || | || ||| | | | Sbjct 5510 GAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAA-TGCCACGCTCA 5568 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || ||||||||||||||||| ||| | |||||| | | ||| | | | ||| Sbjct 5569 TGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAACAAGAAGT 5628 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATG 117418 |||||||| | ||||||| | ||||| ||| Sbjct 5629 ACTACAACGCCACCAACCCCTTCGACTTCATG 5660 >seq415 Length=72904 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| | || ||||| | | Sbjct 7596 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 7537 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | |||||||||||||||||| |||| ||| Sbjct 7536 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGATCAG 7477 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || |||||||| |||| || |||||| ||||||||| Sbjct 7476 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 7417 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 7416 ATCCAGAAGGAG 7405 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || ||||| || | |||| | | | | ||||| Sbjct 7800 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTCAAGTCG 7741 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| || ||||||||| |||||||||| || | |||| ||| ||||| Sbjct 7740 AAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 7681 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||||| |||||||||||||||||||||| | || || || Sbjct 7680 CAGCTTGAAGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 7621 Query 40894 CTAGT 40898 || || Sbjct 7620 CTCGT 7616 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || ||||| | |||||| | | | |||| ||||| Sbjct 8085 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG-TCAAG 8027 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || || ||||| || |||| ||||| || | |||| ||| ||| Sbjct 8026 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGC 7967 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| |||||||||||| ||||||||| |||| || Sbjct 7966 AAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTT 7907 Query 40891 CATCTAGT 40898 ||||| || Sbjct 7906 CATCTCGT 7899 >seq213 Length=68309 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 7562 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 7621 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 7622 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 7681 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 7682 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 7741 Query 40879 G 40879 | Sbjct 7742 G 7742 >seq2834 Length=116819 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 83492 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 83433 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| || || || ||| || Sbjct 83432 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 83373 Query 40903 CGCTTGAGGGGCGGCG 40918 ||| || | || |||| Sbjct 83372 CGCCTGCGTGGTGGCG 83357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194907414720