Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq794 224 1e-53
seq415 140 3e-28
seq213 138 1e-27
seq2834 123 3e-23
>seq794
Length=14906
Score = 224 bits (248), Expect = 1e-53
Identities = 227/292 (78%), Gaps = 5/292 (2%)
Strand=Plus/Plus
Query 116630 CCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
||| | || |||| |||||||| ||||||||||| || |||||||| | |||||| |
Sbjct 4816 CCGCAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATT 4875
Query 116690 GACCTGTCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTC 116746
||||| ||||||||| ||||||| | |||| | |||||| |||||||| |||
Sbjct 4876 GACCTCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTC 4935
Query 116747 ATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC 116806
||| ||||| || ||||| |||||||| || |||||||| |||||||| || |||
Sbjct 4936 ATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTC 4995
Query 116807 GAGCGTTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865
||||| ||| |||| | |||| ||| | ||||||| || |||||||||||||| |||||
Sbjct 4996 GAGCGCTTCAGCTCCG-AGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 5054
Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
| ||||||||| | |||||||| | || ||| ||||||||||||||||
Sbjct 5055 CATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 5106
Score = 219 bits (242), Expect = 4e-52
Identities = 323/452 (71%), Gaps = 4/452 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027
|| ||| |||| ||||||||| ||||| |||||||||||| || || ||| || |
Sbjct 5211 CCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACA-AGAACTCGAC 5269
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||| ||| ||| | |||||||| ||||||||||| ||||||| ||| ||
Sbjct 5270 CTTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTT 5329
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147
|||| |||| || ||||||||||| ||||| ||||||||||| || || ||| ||||||
Sbjct 5330 CGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGA 5389
Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207
|||||| ||| | || ||||| |||| |||||||||||| |||||||| ||| |
Sbjct 5390 GCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACAT 5449
Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
| | || ||| | | | || | |||| ||| ||| || |||| |||||
Sbjct 5450 CAAGTCGAAGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATCGA 5509
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326
| || ||||| || || |||||||| || ||| || || | || ||| | | |
Sbjct 5510 GAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAA-TGCCACGCTCA 5568
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
||| || ||||||||||||||||| ||| | |||||| | | ||| | | | |||
Sbjct 5569 TGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAACAAGAAGT 5628
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATG 117418
|||||||| | ||||||| | ||||| |||
Sbjct 5629 ACTACAACGCCACCAACCCCTTCGACTTCATG 5660
>seq415
Length=72904
Score = 140 bits (154), Expect = 3e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 7596 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 7537
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | |||||||||||||||||| |||| |||
Sbjct 7536 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGATCAG 7477
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || || |||||||| |||| || |||||| |||||||||
Sbjct 7476 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 7417
Query 40870 ATCCAGAAGGAG 40881
||||||||||||
Sbjct 7416 ATCCAGAAGGAG 7405
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| | || ||||| || | |||| | | | | |||||
Sbjct 7800 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTCAAGTCG 7741
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| || ||||||||| |||||||||| || | |||| ||| |||||
Sbjct 7740 AAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 7681
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || || | || ||||| |||||||||||||||||||||| | || || ||
Sbjct 7680 CAGCTTGAAGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 7621
Query 40894 CTAGT 40898
|| ||
Sbjct 7620 CTCGT 7616
Score = 111 bits (122), Expect = 2e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| | || ||||| | |||||| | | | |||| |||||
Sbjct 8085 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACG-TCAAG 8027
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | || || || ||||| || |||| ||||| || | |||| ||| |||
Sbjct 8026 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGC 7967
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | |||||||| |||||||||||| ||||||||| |||| ||
Sbjct 7966 AAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTT 7907
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 7906 CATCTCGT 7899
>seq213
Length=68309
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 7562 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 7621
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 7622 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 7681
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 7682 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 7741
Query 40879 G 40879
|
Sbjct 7742 G 7742
>seq2834
Length=116819
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| |||||||||| || || |||| ||| ||||| ||||| ||
Sbjct 83492 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 83433
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | |||||||| ||||||||||||||||||||| |||| || || || ||| ||
Sbjct 83432 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 83373
Query 40903 CGCTTGAGGGGCGGCG 40918
||| || | || ||||
Sbjct 83372 CGCCTGCGTGGTGGCG 83357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515194907414720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |