Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq313 318 5e-82 seq794 109 5e-19 seq2956 102 7e-17 seq415 84.2 2e-11 >seq313 Length=54589 Score = 318 bits (352), Expect = 5e-82 Identities = 1036/1604 (65%), Gaps = 16/1604 (1%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 || ||| || || ||||| || |||| ||||| | | || || || || ||||||| Sbjct 33416 CTGGTCGACAGTGAACTGGATTGGCGCG-GCGGCGGCCTGCGTACGGAGGTAGTACATGC 33474 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| ||||| | |||||| | ||| || |||||||| | ||| || | | Sbjct 33475 CAGTCTTGAGACCGAGCTTCCAGCCAGCAAAGTGCATCGACGTGATTTTGCCCATCGTAG 33534 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | ||||| | |||| ||| || ||| || || || || || |||||||| | Sbjct 33535 GGTCTTTCATGTGGATGTTGAGCGATTGGGACTGGTCAATGAAGGCACCCCGATCGGCAG 33594 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | | | || ||| || | ||||| || |||||||| || | |||| | Sbjct 33595 CCATCTGGACGATGGTGCGCTGAGAAAGCTCCCAGACCGTCTTGTAGAGCGCCTTGATGT 33654 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || |||| ||||| ||| ||||| ||||| || || | Sbjct 33655 CGTCGGGAATGTTGGGGATCTGCTGGATGGAACCGTTGGAAGCGATGATGCGGTTCTTCA 33714 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 || ||| ||||| |||| | || ||| || |||| || |||| || || | Sbjct 33715 TCTGATCAGACCACAGGCCGAGGTCGACCAAGTCCTTGAGGAGCCAGGGGTTGACGACCT 33774 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||| | || || ||||| ||| ||||| || ||| |||| |||||| | | Sbjct 33775 GGAACTCGCCAGCCAGCACACGGCGAGAGTAGATGTTCGACGTGTACGGCTCGAAACACT 33834 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||| || || |||||| |||||| ||||| ||||| || || | || || |||| Sbjct 33835 CGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGTGCGACGAGCAGAGAGT 33894 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | | |||||||| | ||| | | ||| | | ||||||||| || |||| || Sbjct 33895 TGCGGATGCCGTGCTGAGCAATCTCAGCCTTCACGCTGTCCCAGTCCCAAAGGTCGGTCG 33954 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | | | |||| |||||| ||||| |||| | ||| || || || ||||| | | Sbjct 33955 GAGCC---TTGTTCCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGACTGCCCTGGA 34011 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | || ||||| ||||||| | | |||||| || || | | | | | Sbjct 34012 AGGTCTCGTAGGGACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATGGATGCATGGT 34071 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC 22823 ||||||||||||| || | |||| | | ||| || | ||| | ||||| | Sbjct 34072 ATATAGTCTCGAAAATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAATCGAAAGGCATGC 34131 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 | | || ||| || || || | ||| | || || | |||| || |||| || Sbjct 34132 GAAGAGCCAGGAAGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGGTGACGCA 34191 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 || | | | |||||||||| || || || ||||| | ||||||||| Sbjct 34192 TGTTGCTCTTTCTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGT 34251 Query 22944 TTCTGGTCACAATTTTC---GTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT 23000 | || |||| | | || | | |||||||| || || | Sbjct 34252 T-CT--TCACGAGCACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCGTTCT 34308 Query 23001 GTACA---ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 || || || | || || | |||||| | ||||| || || ||||| || Sbjct 34309 CAACGTCGACGAAGGTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCGACCTCATCAG 34368 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 || |||||||| || || ||| || || ||| | ||||| || | || Sbjct 34369 GGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTACCAAGGTTCT 34428 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 | |||||||| || || ||||| ||||||||| |||||| | || | |||||||||| Sbjct 34429 TTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTTACCCGTCTCGA 34488 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG- 23236 |||| | ||||| || || ||| | |||||||| | || |||| |||| | | Sbjct 34489 CCTGGGCCTCGAGAATGGCGTACCAGAGCTTCTGAGCGCGGAC-CGTCTCACGGCCGCGA 34547 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || | |||||||| | ||| | || || || ||| | || ||| || ||||| Sbjct 34548 CCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAACATCTGCCAGC 34607 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 || || | | | || |||||||| |||| | || | || || ||| |||| Sbjct 34608 CCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCGACACGTTTCATG 34667 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||| |||||||||||||| ||||| || || || ||||| |||||| Sbjct 34668 AAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGGACTTCCTCCTTGCCG 34727 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | ||| | || || ||||| || ||||| ||||||||||| | | Sbjct 34728 TGGTTCTTGCGAAGATCGAGGAAACTGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATG 34787 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || ||||| | ||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 34788 GCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAG 34847 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 || | ||||| || | | |||||| | ||| ||| || | ||| Sbjct 34848 ACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGCCATTGGTGCCAGCAATGTAGCTACCA 34907 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || || | | ||||| | || ||| |||||||| | | || || ||||| ||| Sbjct 34908 GTGGCACGGATGCGATGAACATTGAGACCGATGCCTCCAGCGGTCTTGGAGATCATGGCG 34967 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||||||||||||||| |||||||| ||||| || Sbjct 34968 CAGGTCTTGAGAGTGTCGTAGATGCCGTCGATGCTATCCTCCTT 35011 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| || ||||| || |||||||| ||||||||||| ||||| || || | ||| Sbjct 35153 GACATGAGGTTGTAAGTCTCGATGGCCTTCTCAATGTCCTCGCCGTGAATGCCAACAGCG 35212 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || ||||| ||||| | ||| || |||||| || || | || || ||| ||| Sbjct 35213 ACACGCATAATCATCTGTTGCGGCCTCTCGGCCACCTTTCCATCGATGCGGAGCAGGTAT 35272 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 || | | || || || || || || || | || | ||||| || |||| || ||| Sbjct 35273 GACCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTACTGGAAGTCGCGGTCGTAGACGATG 35332 Query 23969 GCCGAATTCA 23978 ||||| |||| Sbjct 35333 GCCGAGTTCA 35342 >seq794 Length=14906 Score = 109 bits (120), Expect = 5e-19 Identities = 287/427 (67%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || |||||||||||||| ||||| ||||| ||| ||| || | || || Sbjct 5283 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 5342 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||||||| || || || ||||||| | || || || Sbjct 5343 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGT 5402 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152 || ||||| | || || || ||||| ||||| ||| ||| ||||| ||| || | Sbjct 5403 GATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTC--GAAGC 5460 Query 58153 CGACGCGGGATCGCATCTTG-GA-CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | | | || | | ||| || || |||| |||||| |||| ||||| || ||||| Sbjct 5461 CCAGCCCCGA--GGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATCGAGAAGGAGTT 5518 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAA--CAATGATTTGATGTCAAAG 58268 | || || || || || || || | ||||| ||||| | | | | |||| || Sbjct 5519 CCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACG--CTCATGTGCCAG 5576 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCT--CGAACTGATTGGAGAGCGTCATTACA 58326 ||||| ||||| || || ||| | || || | || | | ||| || | |||| Sbjct 5577 TACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAACAAGA-AGT-ACTACA 5634 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 || | | || || || || || ||| | || |||||| |||||||| ||||| | Sbjct 5635 ACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAACTTCT 5694 Query 58387 TCGAAAA 58393 |||| || Sbjct 5695 TCGAGAA 5701 >seq2956 Length=19536 Score = 102 bits (112), Expect = 7e-17 Identities = 252/381 (66%), Gaps = 15/381 (4%) Strand=Plus/Minus Query 23104 CGTGCCCAAATTGCT-CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 || |||| | |||| ||||||||| || ||||||| |||||||| |||| | | Sbjct 4722 CGGGCCCGAGGTGCTTCTGGTTGCTCTTGACGTTGCACGCGTCCTTGTACAGCACGCTTG 4663 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC-------TGAGCG 23215 || ||||||||| | |||| ||||| | || ||||| | | |||||| Sbjct 4662 GCCCGCCCGTCTCCATCTGCACCTCGACCACGGCCGCCCACAGCGCCCTCGCCTTGAGCG 4603 Query 23216 TGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCG 23275 || || || || | ||| | ||||||||| | ||| | |||||| || ||| Sbjct 4602 TG----CGCCGGCCG---CGGCCCGCCCCCTCGTACTGCTCGTAGAGCGCGTCGAACTCG 4550 Query 23276 GCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAG 23335 | |||| |||||| | || ||||| | | ||| ||||| || |||| | Sbjct 4549 CCCGCGTAGCAGTCGACGAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCCG 4490 Query 23336 TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGG 23395 || | || || || | ||| || || ||||| | ||| || |||||| ||| ||||| Sbjct 4489 TCCTGGTCCACCCGGCGCATGAACAGGTCCGGCACCCACAGCGCGTAGGCCAGGTCGCGT 4430 Query 23396 GCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCA 23455 || |||| ||| || |||||| | | || | | ||||| || ||||| || Sbjct 4429 GCCCGCAGCTCGTCCTTGCCGCCGCTGCGGCCCAGGTTGAGGAAGTCAAAGACGTCGGCG 4370 Query 23456 TGCCACGGCTCGAGGTAAACG 23476 ||||||||||| ||||| ||| Sbjct 4369 TGCCACGGCTCCAGGTAGACG 4349 >seq415 Length=72904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || ||||||||| |||| | ||||| | Sbjct 8083 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAA---G 8027 Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | ||| ||||||||| | || || || |||||||| | || ||||||||| Sbjct 8026 AGCAAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGC 7967 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | ||||| || || ||| || |||||||| || || || || ||| Sbjct 7966 AAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTT 7907 Query 31394 CATCTGGTACT 31404 ||||| || || Sbjct 7906 CATCTCGTCCT 7896 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||| || |||||| | || || || | || |||| |||| | ||||| Sbjct 7802 TGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTCAAGT 7743 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 || || ||||||||||||| | || || ||||||||||| | || |||||||||| Sbjct 7742 CGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCA 7683 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | ||| | ||||| || || ||| || ||||| || || || || ||||| | Sbjct 7682 AGCAGCTTGAAGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 7623 Query 31395 ATCTGGTACT 31404 | || || || Sbjct 7622 ACCTCGTCCT 7613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745382114240