Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq313 127 3e-24 >seq313 Length=54589 Score = 127 bits (140), Expect = 3e-24 Identities = 295/440 (67%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||||||||| |||||| ||| | || || || | || ||||| | | | Sbjct 34578 TCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTC 34637 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || |||| | || || |||||||| ||||||||||||||||| ||||| || Sbjct 34638 CAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAAC 34697 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || || | | | |||||| || || ||||| |||||||||||| | Sbjct 34698 AGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAAACTGAAG 34757 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | || | ||||| || || | ||| ||||| | | || || || ||||| || ||| Sbjct 34758 ACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCC 34817 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | ||| | || ||||| || || || | | ||| ||||| | ||| ||| | Sbjct 34818 TGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCG-TTGCT 34876 Query 63489 A-TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA--ATTGATAGA 63545 | | |||||||| || | || |||| ||| ||||||| || | | |||| ||| Sbjct 34877 AGTGCCATTGGTGCCAGCAATGTAGCTACCAGTGGCACGGATGCGATGAACATTG--AGA 34934 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || || || | || ||||| | ||||| || | ||||| |||||||| Sbjct 34935 CCGATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAGATGCCG 34994 Query 63606 TCTATGCTATCATCGATCAT 63625 || |||||||| || |||| Sbjct 34995 TCGATGCTATCCTCCTTCAT 35014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787904100160