Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq794 118 1e-21 seq415 89.7 5e-13 >seq794 Length=14906 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| ||||| || || || ||||| | ||||| || | ||||| | | | ||| Sbjct 5493 GAGGCTGTCGATATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGC 5552 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 ||||| || || | |||||| ||||||||||||| || |||||| | ||| || || | Sbjct 5553 ATGAATGCCACGCTCATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCG 5612 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| | ||| ||||| || || |||||||| || ||| | ||||| ||| Sbjct 5613 CTCGGCAACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCG 5672 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||| ||||| || ||||| ||||||| ||||| || || ||| Sbjct 5673 CTCAGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTAC 5717 >seq415 Length=72904 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || |||||||| || ||| || |||| ||||| ||||| Sbjct 7905 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGC 7964 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||||| || |||||||| ||||| |||||||| || || ||| || Sbjct 7965 TTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTG 8024 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||| ||||||| ||| | ||||||||||| Sbjct 8025 CTCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| |||||||| |||| ||||| |||||||| || || ||||| ||||| Sbjct 7441 GTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTT 7500 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||| | | ||| || || | ||| | Sbjct 7501 GTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGAT 7560 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| | || || ||||| ||||||||| Sbjct 7561 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATA 7597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496040610582400