Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq794 125 1e-23
>seq794
Length=14906
Score = 125 bits (138), Expect = 1e-23
Identities = 291/433 (67%), Gaps = 17/433 (4%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
||| | || ||||||||||| ||||| |||||||| || || || |||||||
Sbjct 5283 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 5342
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||||||||||||||| ||||||||||| || || | |||||| | || || ||
Sbjct 5343 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGT 5402
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605
|| |||||| | ||| ||||||||| || ||||| ||||| ||| || | |
Sbjct 5403 GATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCA--CATC-AAGT-CGAA 5458
Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665
| ||| || | || || |||| ||| ||| || || || || |
Sbjct 5459 GCCCAGCCCCGAGGCTGTTGAGAGGATCATCAT------CGAGGCTGTCGATATCGAGAA 5512
Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725
||||| || || || | || || ||| | | |||||||| || ||| |||||
Sbjct 5513 GGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTG 5572
Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---T 125782
| ||||||| ||||| || || || || || ||| | | | | ||| |||||
Sbjct 5573 CCAGTACATCGAGTTCGTCGCGGACCGCCTGCTG---GTGGCGCTCGGCAACAAGAAGTA 5629
Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842
|||||||||| || ||||| || |||||| | ||| || || || ||||||||
Sbjct 5630 CTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAA 5689
Query 125843 CTTTTTCGAGAAG 125855
||| |||||||||
Sbjct 5690 CTTCTTCGAGAAG 5702
Score = 123 bits (136), Expect = 4e-23
Identities = 233/336 (69%), Gaps = 10/336 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| ||||| ||||| | || ||| | || ||
Sbjct 4822 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 4881
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||||||||||| |||| ||| | | || | | || ||||| || || ||
Sbjct 4882 TCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCC 4941
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||| || | |||||||| |||| || ||||| ||||| ||||| || || || || ||
Sbjct 4942 CACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGA-GCG 5000
Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256
||| ||| ||| | || || |||| ||||| ||||| ||||| |||||||
Sbjct 5001 CTTCAGCTC-CGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 5059
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314
| |||||| | |||||||| | ||||| || || |||| ||||||| |||| ||
Sbjct 5060 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTACATTAGCGAGCCCA 5119
Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349
||| || | || || || ||||| |||||||
Sbjct 5120 AGCAGCGCACCTAC---CTGTTCAACGCCATCGACA 5152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741024259058720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |