Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq794 125 1e-23 >seq794 Length=14906 Score = 125 bits (138), Expect = 1e-23 Identities = 291/433 (67%), Gaps = 17/433 (4%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||| | || ||||||||||| ||||| |||||||| || || || ||||||| Sbjct 5283 CTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 5342 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| || || | |||||| | || || || Sbjct 5343 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGT 5402 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGA 125605 || |||||| | ||| ||||||||| || ||||| ||||| ||| || | | Sbjct 5403 GATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCA--CATC-AAGT-CGAA 5458 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | ||| || | || || |||| ||| ||| || || || || | Sbjct 5459 GCCCAGCCCCGAGGCTGTTGAGAGGATCATCAT------CGAGGCTGTCGATATCGAGAA 5512 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || || || | || || ||| | | |||||||| || ||| ||||| Sbjct 5513 GGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTG 5572 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---T 125782 | ||||||| ||||| || || || || || ||| | | | | ||| ||||| Sbjct 5573 CCAGTACATCGAGTTCGTCGCGGACCGCCTGCTG---GTGGCGCTCGGCAACAAGAAGTA 5629 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 |||||||||| || ||||| || |||||| | ||| || || || |||||||| Sbjct 5630 CTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAA 5689 Query 125843 CTTTTTCGAGAAG 125855 ||| ||||||||| Sbjct 5690 CTTCTTCGAGAAG 5702 Score = 123 bits (136), Expect = 4e-23 Identities = 233/336 (69%), Gaps = 10/336 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | || ||| | || || Sbjct 4822 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 4881 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || | | || ||||| || || || Sbjct 4882 TCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCC 4941 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | |||||||| |||| || ||||| ||||| ||||| || || || || || Sbjct 4942 CACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGA-GCG 5000 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| ||| | || || |||| ||||| ||||| ||||| ||||||| Sbjct 5001 CTTCAGCTC-CGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGA 5059 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | |||||| | |||||||| | ||||| || || |||| ||||||| |||| || Sbjct 5060 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTACATTAGCGAGCCCA 5119 Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 ||| || | || || || ||||| ||||||| Sbjct 5120 AGCAGCGCACCTAC---CTGTTCAACGCCATCGACA 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741024259058720