Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq313 242 1e-58 seq3173 93.3 1e-13 >seq313 Length=54589 Score = 242 bits (268), Expect = 1e-58 Identities = 1042/1614 (65%), Gaps = 46/1614 (3%) Strand=Plus/Minus Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 ||| ||| |||||||| | || || ||| || | |||||||| || | | ||||||| Sbjct 35067 TGTTCAACGCTGGAACCCCCAAGCCTCAGTTGGCGTCTTGCTTCCTCATCGATATGAAGG 35008 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| |||||| || |||| ||||| || |||| || || | || ||||||| | Sbjct 35007 AGGATAGCATCGACGGCATCTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACCG 34948 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC-ACAGAACAGTTACATTCGCG 363745 | || || || ||| | | || || | | ||||| || | || |||||| | Sbjct 34947 CTGGAGGCATCGGTCT--CAATGTTCATCGCATCCGTGCCACTGGT-AGCTACATTGCTG 34891 Query 363746 GCACAGGGGGATACTCGAATGGGCTGG-TTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 |||| || ||| | | |||| | ||||||||||||| || | |||| ||||| Sbjct 34890 GCACCAATGGC-ACTAGCAACGGCTTGATTCCCATGCTTCGCGTCTACAACAACACTGCA 34832 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | ||||| ||||||||||| ||||| || || || || || || |||||||| Sbjct 34831 CGCTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCTCGAGCCA 34772 Query 363865 CATCATGCCGATATTTTTGAGTTTCTT-GAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || ||||| | || |||||| | || || || || ||| || || |||||| | Sbjct 34771 TGGCACGCCGACGTCTTC-AGTTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAAGT 34713 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || || || |||||||| || || ||| || |||| | || ||||| || || || Sbjct 34712 CCGGGCTCGCGACCTGTTCTACGCTCTCTGGATTCCTGATCTCTTCATGAAACGTGTCGA 34653 Query 363984 GGCAGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | ||| | | ||| | ||| | ||||| |||| || || || || | ||||| | Sbjct 34652 G-CAGAACGGCACCTGGACCCTCATGTGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTT 34594 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 || ||||| | | ||||| ||||| |||| || |||||| | ||| ||| Sbjct 34593 ATGGAGACGAGTTCGAGGCTCTTTACGAGCAGTACGAGAAGGAGGGTCGCGGCCGTGAGA 34534 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | | | ||| |||||||| |||| ||||| | || | ||| | ||||| || | | Sbjct 34533 CGGTCCGCGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCCCAGGTCGAGACGGGTAACC 34474 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 ||| ||| ||||||| ||| |||||||||||| |||||| || |||||||||| | Sbjct 34473 CCTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACGA 34414 Query 364223 TTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || |||| |||||| || |||||| | || ||||| || || || ||| || Sbjct 34413 -TCCGCAGCTCCAACCTTTGCTGCGAGATCGTCGAGTACACTGCCCCTGATGAGGTCGCT 34355 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG------ATGGTACTTTT 364335 || || ||| | || ||| | || || ||| | || || | | | ||| | Sbjct 34354 GTCTGCAACTTGGCCTCGCTGGCTCTCCCGACCTTCGTCGACGTTGAGAACGGTGTCTAC 34295 Query 364336 GACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA-ATCTCG-ACAAGGTTA 364393 ||| | || | ||| | || || ||| | |||| | || | | || | ||||| | | Sbjct 34294 GACTTCAAGAAGCTTCACGAGGTTACCCA-GGTGCT-CGTGAAGAACTTGAACAAGATCA 34237 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452 |||||| || | || || | || || ||| || | | || |||||||| ||||| Sbjct 34236 TCGACATCAACCACTACCCGGTGCCCGAGGCCAGAAAGAGC-AACATGCGTCACCGCCCC 34178 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGAT 364512 || | | ||||| | || || || || | || || || ||| | || ||| Sbjct 34177 ATCGCAGTGGGTGTCAACGGTCTTGCCGATGCCTTCCTGGCTCTTCGCATGCCTTTCGAT 34118 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || || || || || || | |||| || || || || || ||| | || Sbjct 34117 TCCCCCGAGGCCAAGCAGCTCAACATCCAGATTTTCGAGACTATATACCATGCATCCATC 34058 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG--GTCC- 364629 ||||| ||| |||| | || || | | || ||| || | |||| |||| Sbjct 34057 ACTGCCTCGATTGATCTTGCCAAGCTCCATGGTCCCTACGAGACCTTCCAGGGCAGTCCT 33998 Query 364630 -CCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA-- 364686 ||||| ||||| | | |||| || | ||||| || | | || | |||| Sbjct 33997 GCCTCT----CAGGGCATCCTGCAGTACGACATGTGGAA---CAAGGC-TCCGACCGACC 33946 Query 364687 --TGGAACTGGGATA-CGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTC 364743 ||| ||||||| | || | | | | || |||| || | |||||||| || Sbjct 33945 TTTGGGACTGGGACAGCGTGAAG-GCTGAGATTGCTCAGCACGGCATCCGCAACTCTCTG 33887 Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803 | || ||||||||||| || || || ||||||||||| ||||||||| ||| Sbjct 33886 CTCGTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTCAACGAGTGTTTC 33827 Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863 || |||| || || | || || ||||| || || | || || || | ||| || Sbjct 33826 GAGCCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAGTTCCAGGTCGTC 33767 Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA-CAGCATGAAGAA 364922 || | || ||||||| | ||||| ||| |||||| ||| ||| |||||||| Sbjct 33766 AACCCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCTGATCAG-ATGAAGAA 33708 Query 364923 CTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAA 364982 | |||||||| | || ||||| | ||| | || || |||| || || | || Sbjct 33707 CCGCATCATCGCTTCCAACGGTTCCATCCAGCAGATCCCCAACATTCCCGACGACATCAA 33648 Query 364983 GCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGA 365042 | | | ||||| || || ||||| |||| ||| || || | | ||||| ||||| Sbjct 33647 GGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGCACCATCGTCCAGATGGCTGCCGA 33588 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTC 365102 ||| ||||| || || ||| ||| ||| | ||| | ||||| | || || Sbjct 33587 TCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCACATGAAAGACCCTACGAT 33528 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||| | || || ||||| || || ||||| |||||| ||||| || Sbjct 33527 GGGCAAAATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGGTCTCAAGACTGG 33474 >seq3173 Length=15433 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 65881 GTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAA 65940 ||||||||||| ||| ||| ||||||| ||||| || |||| |||||||||||| Sbjct 5104 GTTCCGTCATACTTGGCCATGACATCTTCAAGAGCCTTGACCAGACGGCGCTGGATGTAA 5163 Query 65941 CCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAA 66000 ||| | | || || || || |||||||||| |||||| || || || | ||| || Sbjct 5164 CCAGTCTCGGCGGTCTTGACGGCGGTATCAATGAGACCCTCGCGACCAGCCATGGCGTGG 5223 Query 66001 AAGAAAAACTCAGTCGGTTGTAGACCAAGCATAAACGAATTTTGAA 66046 ||||| || |||| || |||||| ||| | | || || |||| Sbjct 5224 AAGAAGAATTCAGAGGGGGTGAGACCACGCAGATAAGAGTTCTGAA 5269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303290610549704