Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq415 98.7 8e-16 seq213 93.3 4e-14 seq313 89.7 4e-13 seq2834 86.0 5e-12 >seq415 Length=72904 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || | |||| ||| | ||| | |||| Sbjct 8083 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 8024 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || ||||| || ||||| || ||||| || || | || || || ||||| Sbjct 8023 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 7964 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||||| | ||||| ||||||||||| || || |||||| | ||| Sbjct 7963 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 7904 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | ||||| ||| Sbjct 7903 CTCGTCCTCCGCCTCCGCGGTGGT 7880 >seq213 Length=68309 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || || | || ||| | ||| || |||| Sbjct 7577 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGAGC 7636 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || || || || |||||||| Sbjct 7637 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 7696 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| | ||||| |||||||| || || Sbjct 7697 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 7740 >seq313 Length=54589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 262/396 (66%), Gaps = 17/396 (4%) Strand=Plus/Plus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT-- 130072 ||||| |||||||| || | ||| || | ||| || ||||| |||| || || || Sbjct 34653 TCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGG 34712 Query 130073 --TTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCG 130128 ||| |||| | || || | | || | || || |||||| | | | ||||||| Sbjct 34713 ACTTCC-TCCTTG----CCGTGGTTC-TTGCGAAGATCGAGGAAACTGAAGACGTCGGCG 34766 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACG 130185 ||||| || || | || || || | || ||| || ||| || || ||||||||| Sbjct 34767 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACG 34826 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | ||| | | ||||||||||| || | ||| | ||| |||||| ||||| || Sbjct 34827 TAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGCCATTG 34886 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 |||| ||||| | || ||| || || | | |||||| | ||||| ||||| || Sbjct 34887 GTGCCAGCAATGTAGCTACCAGTGGCACGGATGCGATGAACATTGAGACCGATGCCTCCA 34946 Query 130306 CCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTC 130364 | || || |||| ||||| || | || || || || ||||| |||| || || Sbjct 34947 GCGGTCTTGGAGATCATGGCGCAGGTCTTG-AGAGTGTCGTAGATGCCGTCGATGCTATC 35005 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTG 130400 || || || | | |||||| || || ||||| || Sbjct 35006 CTCCTTCATATCGATGAGGAAGCAAGACGCCAACTG 35041 >seq2834 Length=116819 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| || || || || || || ||||| || || || ||||| ||| | || Sbjct 83493 AGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGA 83434 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||| ||||||| | || || |||||||| || || || |||||| | || | || | Sbjct 83433 GGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCT 83374 Query 22431 GCGATTGCGCGGAGG 22445 ||| |||| || || Sbjct 83373 GCGCCTGCGTGGTGG 83359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419708704579180