Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq415 98.7 8e-16
seq213 93.3 4e-14
seq313 89.7 4e-13
seq2834 86.0 5e-12
>seq415
Length=72904
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || | |||| ||| | ||| | ||||
Sbjct 8083 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 8024
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || || ||||| || ||||| || ||||| || || | || || || |||||
Sbjct 8023 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 7964
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | || ||| ||||||| | ||||| ||||||||||| || || |||||| | |||
Sbjct 7963 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 7904
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || | ||||| |||
Sbjct 7903 CTCGTCCTCCGCCTCCGCGGTGGT 7880
>seq213
Length=68309
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || || || | || ||| | ||| || ||||
Sbjct 7577 ACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAATGTCAAGAGC 7636
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || || ||||||||
Sbjct 7637 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 7696
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||| | |||||| ||||||| | ||||| |||||||| || ||
Sbjct 7697 CAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 7740
>seq313
Length=54589
Score = 89.7 bits (98), Expect = 4e-13
Identities = 262/396 (66%), Gaps = 17/396 (4%)
Strand=Plus/Plus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT-- 130072
||||| |||||||| || | ||| || | ||| || ||||| |||| || || ||
Sbjct 34653 TCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGG 34712
Query 130073 --TTCTATCCTCGGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCG 130128
||| |||| | || || | | || | || || |||||| | | | |||||||
Sbjct 34713 ACTTCC-TCCTTG----CCGTGGTTC-TTGCGAAGATCGAGGAAACTGAAGACGTCGGCG 34766
Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACG 130185
||||| || || | || || || | || ||| || ||| || || |||||||||
Sbjct 34767 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACG 34826
Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245
| ||| | | ||||||||||| || | ||| | ||| |||||| ||||| ||
Sbjct 34827 TAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGCCATTG 34886
Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305
|||| ||||| | || ||| || || | | |||||| | ||||| ||||| ||
Sbjct 34887 GTGCCAGCAATGTAGCTACCAGTGGCACGGATGCGATGAACATTGAGACCGATGCCTCCA 34946
Query 130306 CCAAATTTTGATATCAACGCGCA-ATCGCGTAGCGTTTCATAAATGCCAACGATACTGTC 130364
| || || |||| ||||| || | || || || || ||||| |||| || ||
Sbjct 34947 GCGGTCTTGGAGATCATGGCGCAGGTCTTG-AGAGTGTCGTAGATGCCGTCGATGCTATC 35005
Query 130365 TTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTG 130400
|| || || | | |||||| || || ||||| ||
Sbjct 35006 CTCCTTCATATCGATGAGGAAGCAAGACGCCAACTG 35041
>seq2834
Length=116819
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370
|||||||||||| || || || || || || ||||| || || || ||||| ||| | ||
Sbjct 83493 AGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGA 83434
Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430
|||| ||||||| | || || |||||||| || || || |||||| | || | || |
Sbjct 83433 GGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCT 83374
Query 22431 GCGATTGCGCGGAGG 22445
||| |||| || ||
Sbjct 83373 GCGCCTGCGTGGTGG 83359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419708704579180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |