Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq665 111 3e-19
seq3737 91.5 3e-13
>seq665
Length=14552
Score = 111 bits (122), Expect = 3e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 1250 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTTAAC 1309
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| | |||||||| | || || ||||| |||| ||||| || |
Sbjct 1310 CAGACCCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 1369
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| |||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | |||
Sbjct 1370 GGCAAGACCACCCTGATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 1428
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
|| ||||| | ||| || || || ||||||||| ||||||||
Sbjct 1429 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTCC 1471
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| || ||| ||||| | ||| | | ||
Sbjct 2652 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCTT 2711
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|||| |||||| | || ||| ||||||| || ||||||||||||||||| || |||||
Sbjct 2712 GCTC-GTGGCAGCGTCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 2770
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| || |||||||||
Sbjct 2771 GACTCTCTCGGCGCTCTG 2788
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761
|| || || ||||||||||||||||||||||| || | || ||| | || | | |||
Sbjct 1610 TCGCTTTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 1668
Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
||| | || |||||||| ||||| ||||||||||||||| || ||||| || |||||
Sbjct 1669 CGATATTCTTCTGCTTGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 1728
Query 279821 AGTGTCCTACCT 279832
| | ||||||
Sbjct 1729 CGAGAACTACCT 1740
>seq3737
Length=19909
Score = 91.5 bits (100), Expect = 3e-13
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233
||||||| |||| ||||| || || || || || ||||| |||||||||||||| | |
Sbjct 10963 TCATTGGTGCCAACGGTGCTGGCAAATCCACGCTCATCAAGGTCCTGACTGGCGA-AGTC 11021
Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292
| || | | || | | | |||||| || ||| |||| || | |||| || |||
Sbjct 11022 ATTCCGCAAACTGGCAAGGTCGAGAAGCACCCTAACCTGCGTATTGGTTACATCAAGCAG 11081
Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352
|| ||| | | ||| |||||| ||| |||| | ||| || ||||| ||| | ||||||
Sbjct 11082 CATGCTCTTGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTACTTGCAGTGG 11141
Query 280353 CGCTATGCAAGTGG 280366
|| || || | |||
Sbjct 11142 CGTTACGCCAATGG 11155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027787125932252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |