Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq665 111 3e-19 seq3737 91.5 3e-13 >seq665 Length=14552 Score = 111 bits (122), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 1250 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTTAAC 1309 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||| | || || ||||| |||| ||||| || | Sbjct 1310 CAGACCCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 1369 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 1370 GGCAAGACCACCCTGATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 1428 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || || || ||||||||| |||||||| Sbjct 1429 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTCC 1471 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| || ||| ||||| | ||| | | || Sbjct 2652 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCTT 2711 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | || ||| ||||||| || ||||||||||||||||| || ||||| Sbjct 2712 GCTC-GTGGCAGCGTCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 2770 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || ||||||||| Sbjct 2771 GACTCTCTCGGCGCTCTG 2788 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 1610 TCGCTTTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 1668 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || |||||||| ||||| ||||||||||||||| || ||||| || ||||| Sbjct 1669 CGATATTCTTCTGCTTGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 1728 Query 279821 AGTGTCCTACCT 279832 | | |||||| Sbjct 1729 CGAGAACTACCT 1740 >seq3737 Length=19909 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| |||| ||||| || || || || || ||||| |||||||||||||| | | Sbjct 10963 TCATTGGTGCCAACGGTGCTGGCAAATCCACGCTCATCAAGGTCCTGACTGGCGA-AGTC 11021 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || | | || | | | |||||| || ||| |||| || | |||| || ||| Sbjct 11022 ATTCCGCAAACTGGCAAGGTCGAGAAGCACCCTAACCTGCGTATTGGTTACATCAAGCAG 11081 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 || ||| | | ||| |||||| ||| |||| | ||| || ||||| ||| | |||||| Sbjct 11082 CATGCTCTTGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTACTTGCAGTGG 11141 Query 280353 CGCTATGCAAGTGG 280366 || || || | ||| Sbjct 11142 CGTTACGCCAATGG 11155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027787125932252