Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq415 113 1e-19 seq213 86.0 1e-11 >seq415 Length=72904 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||||||||| ||| || || || || || ||||||| Sbjct 7881 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 7940 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || |||||||||| ||||| ||| || Sbjct 7941 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGA 8000 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||||||||| || ||| || ||||| || || | ||| ||| || || Sbjct 8001 ATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGACGACTCGAC 8059 Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449 || || ||||| ||||| ||||| Sbjct 8060 CTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || ||||| || | || || || |||||| Sbjct 7406 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAG 7465 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| || ||||| || ||||| || | ||||| || Sbjct 7466 ATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGACTTCACATTG 7525 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || ||||| | ||||| ||||| ||||| || ||||||||| Sbjct 7526 TCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 7585 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 7586 AAGATTTGCAT 7596 >seq213 Length=68309 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||||||| Sbjct 7740 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 7681 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || ||||| || || ||| || || || || |||||||| || ||| || || || Sbjct 7680 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATT 7625 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 7624 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 7565 Query 288462 GAA 288464 ||| Sbjct 7564 GAA 7562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179597388777416