Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq313 187 2e-42
seq794 178 1e-39
seq2956 150 2e-31
>seq313
Length=54589
Score = 187 bits (206), Expect = 2e-42
Identities = 812/1259 (64%), Gaps = 29/1259 (2%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || |||||||| |||| ||| || | | || | || ||| | |
Sbjct 33763 GGTTGACGACCTGGAACTCGCCAGCCAGCACACGGCGAGAGTAGATGTTCGACGTGTACG 33822
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || || | ||||| ||| || || ||| || | ||||| |||||| || |
Sbjct 33823 GCTCGAAACACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGTGCGA 33882
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCC-TGCCAATCC 153206
| | || ||| || || | ||||||| ||| || |||||| ||| | ||| |||
Sbjct 33883 CGAGCAGAGAGTTGCGGATGCCGTGCTGAGCAATCTCAGCCTTCA-CGCTGTCCCAGTCC 33941
Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266
|| || | | ||| | | |||||||||||||||||| | | || || ||| |||
Sbjct 33942 CAAAGGTCGGTCGGAGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGA 34001
Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTC-GAG 153325
||||| || || |||| || | | | | ||| || || | | || | ||
Sbjct 34002 CTGCCCTGGAAGGTCTCGTAGGGACCATGGAGCTTGGCAAGATCA-ATCGAGGCAGTGAT 34060
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC--GCTTCTTCGCTC 153383
| ||| |||||| || ||| || || | ||||| | || || || |
Sbjct 34061 GGATGCATGGTATATAGTCTCGAAAATCTGGATGTTGAG--CTGCTTGGCCTCGGGGGAA 34118
Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443
||| | |||||||| || || ||||| ||||| ||||| | || ||| || |||||
Sbjct 34119 TCGAAAGGCATGCGAAGAGCCAGGAAGGCATCGGCAAGACCGTTGACACCCACTGCGATG 34178
Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGAT 153502
|| || || | |||||| || || |||| | || ||||| ||| |||||
Sbjct 34179 GGGCGGTGACGCATGTTGCTCTTTCTGGC-CTCGGGCACCGGGTAGTGGTTGATGTCGAT 34237
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
|| ||||| | ||| ||| | ||| | || | | | | ||| |||| ||| || ||
Sbjct 34238 GATCTTGTTCAAGTTCTTCACGAGCACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTA 34297
Query 153563 GGT-CATTTCGTCGACGCGTACGCA--TCGATTCACGGCAATAGACGCCAGATTACAGAC 153619
| | ||| || ||| ||| | ||| | || | || |||| || |||||
Sbjct 34298 GACACCGTTC-TCAACGTCGACGAAGGTCGGGAGA--GCCAGCGAGGCCAAGTTGCAGAC 34354
Query 153620 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679
|| ||| || | | | |||||| ||||||||| ||| |||||| || ||
Sbjct 34355 AGCGACCTCATCAGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTGGAGCTGCGGAT 34414
Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|| | || | || ||||| ||||| ||||| || ||| | |||||| | ||
Sbjct 34415 CGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAGGG 34474
Query 153740 TCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGCACCC 153798
|| |||||||| || | |||| || | || || | ||| || || |||
Sbjct 34475 GTTACCCGTCTCGACCTGGGCCTCGAGAATGG-CGTACCAGAGCTTCTGAGCGCGGACCG 34533
Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858
|| || ||| ||||| ||||||| ||||||| || ||| |||||||| || |
Sbjct 34534 TCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCAT 34593
Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCG 153917
| || || || || || |||| | || ||||| || | ||| | ||| | ||
Sbjct 34594 AAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGC- 34652
Query 153918 TTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG 153977
| ||| ||| |||||| ||||| || | |||||| ||||| | |||||||| ||| |
Sbjct 34653 TCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGG 34712
Query 153978 CAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTGCC 154035
|||||| ||| ||| || | |||| ||| | || ||| |||||||||||
Sbjct 34713 ACTTCCTCCTTGCCGTGGTTC--TTGCGAAGATCGAGGAAACTGAAGACGTCGGCGTGCC 34770
Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGC 154092
| || || | ||||| ||| | |||||| |||| || || ||||| || |||| ||
Sbjct 34771 ATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTAGC 34830
Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGGTC 154151
| | | |||||| ||||||| | |||||| || |||| |||| ||||| |||||
Sbjct 34831 GTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCG-TTGCTAGTGCCATTGGTG 34889
Query 154152 GAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCG 154211
| || | ||| || ||| || | |||| || || | || ||||| || ||
Sbjct 34890 CCAGCAATGTAGCTACCAGTGGCACGGATGCGATGAACATTGAGACCGATGCCTCCAGCG 34949
Query 154212 TACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270
||| || || |||||| || || ||||||||||||||||||||| ||
Sbjct 34950 GTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGTCGATGCTATCCTC 35008
>seq794
Length=14906
Score = 178 bits (196), Expect = 1e-39
Identities = 307/440 (70%), Gaps = 21/440 (5%)
Strand=Plus/Plus
Query 52407 GCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATT 52466
||||||||| |||||||| | || || |||| ||| ||| ||||||| | |
Sbjct 5289 GCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTC 5348
Query 52467 AAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAA 52526
|| | | || | |||||||| || || ||| ||||||| | || || || || ||
Sbjct 5349 AAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGTGATGAG 5408
Query 52527 GGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAAATTGGA 52585
|| ||||||| |||||||| ||||| || | | ||| || | || | ||
Sbjct 5409 GGCATGCACACCGACTTTGCCTGCCTGCTGTT------CTCGC---AC--ATCAAGTCGA 5457
Query 52586 TTCGGA--CACGATCCTG-----AGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGT 52638
| | | ||| ||| || || ||| ||||| || | |||||| |||||||
Sbjct 5458 AGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATCGAGAAGGAGT 5517
Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGT 52698
| | |||| |||||||| |||| || || |||||||| || | ||||||| |||
Sbjct 5518 TCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTGCCAGT 5577
Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAAC 52757
|||||||||| || ||||| || ||| ||||| |||| |||| | | ||||||| ||||
Sbjct 5578 ACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTC-GGCAACAAGAAGTACTACAAC 5636
Query 52758 GCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTC 52817
|| ||| || || || || ||| | ||||||||||| |||||||||||||| |||
Sbjct 5637 GCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAACTTCTTC 5696
Query 52818 GAGAAGCGAGTCGGCGAGTA 52837
|||||||| || || || ||
Sbjct 5697 GAGAAGCGTGTTGGTGACTA 5716
>seq2956
Length=19536
Score = 150 bits (166), Expect = 2e-31
Identities = 313/459 (68%), Gaps = 18/459 (4%)
Strand=Plus/Minus
Query 153695 CTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 153754
||| ||||| ||| ||||||||||| ||| | |||| | || ||||| ||||| |
Sbjct 4706 CTGGTTGCTCTTGACGTTGCACGCGTCCTTGTACAGCACGCTTGGCCCGCCCGTCTCCAT 4647
Query 153755 TTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGC-TCGCACCCGCTGCCGATAGCGGC 153813
||| ||||| | | ||| || ||| | | | || |||| |||||
Sbjct 4646 CTGCACCTCGACCACGGCCGCCCACAGCGCCCTCGCCTTGAGCGTGC-GCCGGCCGCGGC 4588
Query 153814 CCTCGCTCTCGTATCGCTCGTACAGTCGC-TCAAACTCGTCGCCGTAGCAGTCGGCGAGG 153872
|| | | |||||| ||||||| || ||| || |||||| | ||||||||||| ||||
Sbjct 4587 CCGCCCCCTCGTACTGCTCGTAGAG-CGCGTCGAACTCGCCCGCGTAGCAGTCGACGAGC 4529
Query 153873 CCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATG 153932
||||| |||| ||| |||||||||| ||| |||| || || || ||||||
Sbjct 4528 CCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCCGTCCTGGTCCACCCGGCGCATG 4469
Query 153933 AACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA-TCCTCCGCGCC 153991
||||| ||||||||||| |||||||| |||||||| ||| ||| || ||| |||
Sbjct 4468 AACAGGTCCGGCACCCACAGCGCGTAGGCCAGGTCGCGTGCCC-GCAGCTCGTCCTTGCC 4410
Query 153992 CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051
| |||| ||| ||||| | | | ||| |||||||||||| || || | ||||||
Sbjct 4409 GCCGCTGCGGCCCAGGTTGAGGAAGTCAAAGACGTCGGCGTGCCACGGCTCCAGGTAGAC 4350
Query 154052 GGCCAGGGCACCTTTACGCTTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGAC 154111
| | ||| || ||| | ||| || | || |||| | |||||||||
Sbjct 4349 GACGAGGCTGCC-----GCTGGCGCCCCCGAGCAGCGCGGCG-------TCGTTGAAGAC 4302
Query 154112 GCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
||||| |||||| | | ||| | ||||| |||| |||
Sbjct 4301 GCGCAGCATGGGGCCGATGCCCTTGGCGGTCCCGTCGGT 4263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496239001227840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |