Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq415 118 1e-21 seq794 111 1e-19 seq213 98.7 9e-16 >seq415 Length=72904 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || ||||| ||||| ||| | Sbjct 7881 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 7940 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| ||||||| ||||||||||| ||||| Sbjct 7941 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGA 8000 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| || ||||| |||| |||| |||||| | |||||| Sbjct 8001 ATGCCTTCCTTATCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCGGACGACTCGAC 8059 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 8060 CTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||| | ||||||||||| || || |||||||| ||| Sbjct 7442 TCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTG 7501 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | |||| ||||||| ||||||||| | ||| | Sbjct 7502 TCTTGGATCTTGGACTTCACATTGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATG 7561 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || || || ||||| Sbjct 7562 GTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 7596 >seq794 Length=14906 Score = 111 bits (122), Expect = 1e-19 Identities = 295/445 (66%), Gaps = 13/445 (3%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| |||| || |||||| ||||||||| |||||||| ||| ||| || | || Sbjct 5280 CGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATC 5339 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | |||||||| ||||| || ||||||||| || || Sbjct 5340 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCC 5399 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACAC-TAGAGTCGATC 47316 | || || ||| |||||||| |||||||||| || || | ||| | |||||| Sbjct 5400 CGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAG 5459 Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 || || | | | || ||| | ||| || |||| || |||| || Sbjct 5460 CCCAGCCC--CGAGGCTGTTGAGAGGATCATCAT---CGAGGCTGTCGATATCGAGAAGG 5514 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| | | || || ||||||| || | | || ||||| || | | ||| | Sbjct 5515 AGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTGCC 5574 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 |||||||||| || ||||| ||||||||||| || ||| | ||||| ||| Sbjct 5575 AGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAA---CAAGAAGTACT 5631 Query 47497 ACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 ||| || | | || ||||| || ||| | |||||||||||| ||||||||||||| Sbjct 5632 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAACT 5691 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||| || || || || Sbjct 5692 TCTTCGAGAAGCGTGTTGGTGACTA 5716 >seq213 Length=68309 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 7740 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 7681 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 7680 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 7621 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||||| |||||| |||| ||| | || ||||| || || || || || || Sbjct 7620 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 7562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478380137280