Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq415 118 1e-21
seq794 111 1e-19
seq213 98.7 9e-16
>seq415
Length=72904
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | || | ||| | || ||||| || ||||| ||||| ||| |
Sbjct 7881 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 7940
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| ||||||| ||||||||||| |||||
Sbjct 7941 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGA 8000
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| ||||| ||| ||| || ||||| |||| |||| |||||| | ||||||
Sbjct 8001 ATGCCTTCCTTATCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCGGACGACTCGAC 8059
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|| | ||| | || ||||||||
Sbjct 8060 CTCAAGGGTGATGGTCTTGCCGGT 8083
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||| | ||||||||||| || || |||||||| |||
Sbjct 7442 TCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTG 7501
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
|| ||| || ||| | | |||| ||||||| ||||||||| | ||| |
Sbjct 7502 TCTTGGATCTTGGACTTCACATTGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATG 7561
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| || || || || || || |||||
Sbjct 7562 GTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 7596
>seq794
Length=14906
Score = 111 bits (122), Expect = 1e-19
Identities = 295/445 (66%), Gaps = 13/445 (3%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
||| |||| || |||||| ||||||||| |||||||| ||| ||| || | ||
Sbjct 5280 CGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATC 5339
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | | || | || | |||||||| ||||| || ||||||||| || ||
Sbjct 5340 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCC 5399
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACAC-TAGAGTCGATC 47316
| || || ||| |||||||| |||||||||| || || | ||| | ||||||
Sbjct 5400 CGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAG 5459
Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376
|| || | | | || ||| | ||| || |||| || |||| ||
Sbjct 5460 CCCAGCCC--CGAGGCTGTTGAGAGGATCATCAT---CGAGGCTGTCGATATCGAGAAGG 5514
Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436
|||| | | || || ||||||| || | | || ||||| || | | ||| |
Sbjct 5515 AGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTGCC 5574
Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496
|||||||||| || ||||| ||||||||||| || ||| | ||||| |||
Sbjct 5575 AGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAA---CAAGAAGTACT 5631
Query 47497 ACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553
||| || | | || ||||| || ||| | |||||||||||| |||||||||||||
Sbjct 5632 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAGACCAACT 5691
Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578
| ||||||||||| || || || ||
Sbjct 5692 TCTTCGAGAAGCGTGTTGGTGACTA 5716
>seq213
Length=68309
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || ||||| || || ||| |||||
Sbjct 7740 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 7681
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 7680 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 7621
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| |||||||| |||||| |||| ||| | || ||||| || || || || || ||
Sbjct 7620 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 7562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475478380137280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |