Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq794 159 6e-34 seq313 120 5e-22 >seq794 Length=14906 Score = 159 bits (176), Expect = 6e-34 Identities = 288/418 (69%), Gaps = 5/418 (1%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | || || |||||||| |||| ||||| Sbjct 5702 CTTCTCGAAGAAGTTGGTCTTGCCGCTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTT 5643 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| ||||| ||| |||||| | ||| || || || || Sbjct 5642 GGTGGCGTTGTAGTACTTCTTGTTGCCGAGCGCCACCAGCAGGCGGTCCGCGACGAACTC 5583 Query 159769 GATGTAGCTACACATCTGC-TCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 |||||| ||||| || | || || || || || || ||||| ||||| |||| Sbjct 5582 GATGTACTGGCACATGAGCGTGGCA-TTCATGCCGAGAAGAGCGACGGGCAGCGCATCCG 5524 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||||||| || ||||| || ||| | | ||| | ||| ||| | Sbjct 5523 TCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATCCTCTCAACAGCCTCGGGGC 5464 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | || || | ||||| ||||| ||||||||| ||||| |||| Sbjct 5463 TGGGCTT---CGACTTGATGTGCGAGAACAGCAGGCAGGCAAAGTCGGTGTGCATGCCCT 5407 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || || |||| ||||||||| | | |||| || ||||||| || ||| |||| Sbjct 5406 CATCACGGGAAATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGA 5347 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||| || |||| || || | ||||| || ||||| ||||| ||||| || || || Sbjct 5346 GCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTCGACGGCGGCGAAGGC 5289 >seq313 Length=54589 Score = 120 bits (132), Expect = 5e-22 Identities = 330/495 (67%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || |||||||| || |||| |||| ||||||| | | || ||||||||| Sbjct 33416 CTGGTCGACAGTGAACTGGATTGGCGCGG-CGGC-GGCCTGCGTACGGAGGTAGTACATG 33473 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| || | |||||| || | | ||||| || | Sbjct 33474 CCAGTCTTGAGACCGAGCTTCCAGCCAGCAAAGTGCATCGACGTGATTTTGCCCATCGTA 33533 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 ||||| |||||| ||||| || || ||| ||||| ||||| | ||||||| || Sbjct 33534 GGGTCTTTCATGTGGATGTTGAGCGATTGGGACTGGTCAATGAAGGCACCCCGATCGGCA 33593 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | || ||||| ||| |||| |||||| ||||||||| | | || || || | Sbjct 33594 GCCATCTGGACGATGGTGCGCTGAGAAAGCTCCCAGACCGTCTTGTAGAGCGCCT-TGAT 33652 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || | || | | | | | || ||| || |||||| || || | | || Sbjct 33653 GTCGTCGGGAATGT-TGGGGATCTGCTGGATGGAACCGTTGGAAGCGATGATGCGGTTCT 33711 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || ||| || ||||| ||| | || || ||| | || |||||||| || Sbjct 33712 TCATCTGATCAGACCACAGGCCGAGGTCGACCAAGTCCTTGAGGAGCCAGGGGTTGACGA 33771 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | |||||| | || | | | | ||| ||| | || ||||| Sbjct 33772 CCTGGAACTCGCCAGCCAGCACACGGCGAGAGTAGATGTTCGACGTGTACGGCTCGAAAC 33831 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||| ||||| |||||| ||| ||| ||||||||||| || | |||||| | Sbjct 33832 ACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGTGCGACGAGCAGAG 33891 Query 204315 AGTTGCGCACACCGT 204329 ||||||| | |||| Sbjct 33892 AGTTGCGGATGCCGT 33906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117708432320