Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq415 123 6e-23
seq213 105 2e-17
seq2834 95.1 3e-14
>seq415
Length=72904
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||||||||| |||||||| |||| ||||||||| | || || | ||||||
Sbjct 7613 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCT 7672
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| | |||||||||||||| || ||||| |||
Sbjct 7673 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 7732
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||||| | || || || | ||||| |||
Sbjct 7733 TGGATCTTCGACTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTC 7792
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 7793 TTGCCAGT 7800
Score = 118 bits (130), Expect = 2e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496
||||||| |||| ||||||||| | | || | || || ||||||||||| || ||||
Sbjct 7404 ACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGA 7463
Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556
|||||||||||||||| ||||| || || ||| || || ||||| ||||||
Sbjct 7464 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGACTTCACAT 7523
Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCA 199616
|||| ||||| | || || || ||||| ||||| ||||| || ||||| || || |
Sbjct 7524 TGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGA 7583
Query 199617 CAAAAATTTG 199626
| || |||||
Sbjct 7584 CGAAGATTTG 7593
>seq213
Length=68309
Score = 105 bits (116), Expect = 2e-17
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | || || | ||||| || |||||||| ||||||||||
Sbjct 7742 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 7683
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || |||||||||||||| ||| || || ||||| ||||| ||| || |
Sbjct 7682 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 7623
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| |||||||| || || || |
Sbjct 7622 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 7563
Query 199620 A 199620
|
Sbjct 7562 A 7562
>seq2834
Length=116819
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || || |||||||| |||| ||||||||| | | ||
Sbjct 83365 CGCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 83424
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| || |||||||| || |||||||| |||||||||||||||||
Sbjct 83425 CGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGG 83474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178864624192724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |