Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq415 188 9e-43 seq3195 102 1e-16 seq3135 100 4e-16 seq3686 91.5 2e-13 >seq415 Length=72904 Score = 188 bits (208), Expect = 9e-43 Identities = 419/623 (67%), Gaps = 17/623 (3%) Strand=Plus/Plus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA-AGGAGTCTCGAATCGAA 7461 ||||||||||||| | ||| || || | | ||||| || || | || | | ||||| Sbjct 23152 CTTTCTTATGTTTTCTTTTGAATTCGTTAACGAAGTGGTTGACAAGACGGTTG--TCGAA 23209 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || ||||||| ||| ||||| || || || | ||||| || ||||||||| | || Sbjct 23210 GTCCTCGCCACCCAGGTGAGTATCGCCGGCAGTGGACTTGACCTCGAAGATACCTTCCTC 23269 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 |||| | | | |||||||| || |||||||| || || || || || | ||||| Sbjct 23270 AATGGTGAGGAGGGAAACATCGAAAGTACCACCGCCAAGATCGAAGATCATAACGTTGCG 23329 Query 7582 ATC----GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || || | | ||||| || |||||||| ||||| || || || || || || | Sbjct 23330 CTCACCAGTAGCC----TTCTTGTCAAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGT 23385 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || ||||| || ||| ||||| || || | ||||| || || || || || | Sbjct 23386 TGATGATACGGAGGACGTTGAGGCCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCT 23445 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| ||||| || || || |||| |||| | ||| || | Sbjct 23446 GGGAGTCGTTGAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACGGTGCCACCAAGGT 23505 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 |||| || || | || |||| ||||| || ||||| || || || || |||| | | Sbjct 23506 ACGACTCAGCAGTCTCCCTCATCTTGGTCAGGACCATGGAAGAGATTTCCTCAGGAGTGA 23565 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCACCGGGG 7876 | ||| || || || || || || | || | || || | | | | | | Sbjct 23566 AAGTCTTCTCCTCGCCCTTGAACTCGACCTGGATGACAGGCTTGCCACCCTTCTC----G 23621 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | | | ||||||||| | ||||||| ||| ||||| | Sbjct 23622 ATGACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCGGCGTCGTTGAACTTGCGG 23681 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| ||||| || || ||||| | |||||||||||| |||||||| Sbjct 23682 CCAATCAGGCGCTTGGCATCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTT 23741 Query 7997 GCCGCGTCCCCGATAAGACGTTC 8019 || | ||| || || ||||| || Sbjct 23742 GCGGAGTCACCAATCAGACGCTC 23764 >seq3195 Length=57158 Score = 102 bits (112), Expect = 1e-16 Identities = 204/302 (68%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | |||||| | || || || || ||||| || ||||| |||| || Sbjct 4256 TCGAAGTCCTGACCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACGCCG 4315 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | |||| | | || ||||| || ||||||||||| || || | ||||| ||| Sbjct 4316 CCCTGGATGTGCAGGAGGGAGACATCGAAAGTACCACCACCAAGATCGTAGATGAGGACG 4375 Query 7577 TTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || | || ||| |||||||||| |||||||| || || || || Sbjct 4376 TTCCTCTCCTTCTCAGACTTGCCGGAGCCGAGACCGTAGGCGATAGCGGCGGCGGTGGGC 4435 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| |||||||| || | | || || || || || || Sbjct 4436 TCGTTGATGATACGGAGGACGTTGAGGCCAGCGATGGAGCCGGCGTCCTTGGTAGCCTGA 4495 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || | ||| || | | || ||||| || Sbjct 4496 CGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCA 4555 Query 7754 AG 7755 || Sbjct 4556 AG 4557 >seq3135 Length=12600 Score = 100 bits (110), Expect = 4e-16 Identities = 228/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | ||| Sbjct 9079 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACACCC 9138 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA-GTAC 7575 | || | | | | |||||||| || ||||||||||| || || | | || | | Sbjct 9139 TCGTCGACAGTAAGAATGGAAACATCGAAGGTACCACCACCAAGATCGTAGACGATGATC 9198 Query 7576 GTTCGTATCG--TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | ||| | ||||| || || ||||| || | ||| || || || || Sbjct 9199 TGGCGCTCCGACTTGTCATCCTTCTTGTCCAGGCCGTAAGCCAGAGCGGCAGCGGTGGGC 9258 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | | |||||| ||| || || ||||| || | || || || || || Sbjct 9259 TCGTTGACGACACGAAGGACGTTGAGACCGGCAATGGTGCCGGCGTCCTTGGTGGCGGCA 9318 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | ||||| ||||||||||| ||||| ||||| |||| || || ||| ||| Sbjct 9319 CGCTGAGCGTCGTTGAAGTAGGCCGGAACCGTGACGACGGCGTTGGTAACGGTCTCGCCG 9378 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || || || || | || ||||| ||| | |||||||| Sbjct 9379 AGGTAGTTCTCAGCAACCTCCTTCATCTTGCTCAGAACCAT 9419 >seq3686 Length=22746 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| |||| ||| || || || || || || | | ||| || ||| Sbjct 8850 CTTCTCGAGACCGTAGGCGAGAGCGGCGGCAGTGGGCTCGTTGACGACACGGAGGACGTT 8791 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || ||| | || | || || || || || || || || || ||||| |||||||| Sbjct 8790 CAAGCCGGAGATCTGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGC 8731 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || || || |||| | |||| ||||| ||||| || | || ||| | || || Sbjct 8730 AGGGACAGTGACAACGGCGTTCTTGACGTTCTTGCCGAGGTAAGCCTCAGCGGTCTCCTT 8671 Query 7777 CATTTTGGTAAGAAC 7791 ||| ||| ||||| Sbjct 8670 CATCTTGCCGAGAAC 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635102853488480