Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq313 170 2e-37 seq794 109 7e-19 >seq313 Length=54589 Score = 170 bits (188), Expect = 2e-37 Identities = 492/749 (66%), Gaps = 15/749 (2%) Strand=Plus/Minus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || ||||||||||| || || | || || || | ||| ||||| || | | ||| Sbjct 35068 CTGTTCAACGCTGGAACCCCCAAGCCTCAGTTGGCGTCTTGCTTCCTCATCGATATGAAG 35009 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 |||||| ||| | ||||| |||| |||||||| || ||| ||||| ||| Sbjct 35008 GAGGATAGCATCGACGGCATCTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACC 34949 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGG 111904 ||||| || ||||| | | | ||| || | |||| | || | ||| || Sbjct 34948 GCTGGAGGCATCGGTCTCAATGTTCATCGCATCCGTGCCA-CTGGTAGCTACATTGCTGG 34890 Query 111905 TACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 || ||||| | | || | || | ||||| ||||||||||| | ||| ||| || | Sbjct 34889 CACCAATGGCACTAGCA-ACGGCTTGATTCCCATGCTTCGCGTCTACAACAACACTGCAC 34831 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 |||| || |||| | ||| ||||| ||| | |||| |||| || |||| Sbjct 34830 GCTACGTTGACCAGGGTGGCAACAAGCGTCC---GGGTGCCTTCGCCATCTACCTCGAGC 34774 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 |||||||||| || || | ||||| || | || ||||| || | ||||| | Sbjct 34773 CATGGCACGCCGACGTCTTCAGTTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAAG 34714 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 ||| ||||| || |||| ||||||||||||||| |||||||||||||| | || | Sbjct 34713 TCCGGGCTCGCGACCTGTTCTACGCTCTCTGGATTCCTGATCTCTTCATGAAACGTGTCG 34654 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 || ||| |||| ||| | ||| | || || || || || || || | |||| Sbjct 34653 AGCAGAACGGCACCTGGACCCTCATGTGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTT 34594 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 || || ||||| || || || ||| |||||||| | || |||| | || || Sbjct 34593 ATGGAGACGAGTTCGAGGCTCTTTACGAGCAGTACGAGAAGGAGGGTCGCGGCCGTGAGA 34534 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 |||| | ||| | || | | ||| | || |||||| || | || |||||| |||| Sbjct 34533 CGGTCCGCGCT-CAGAAGCTCTGGTACGCCATTCTCGAGGCCCAGGTCGAGACGGGTAAC 34475 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| || ||| |||| ||||| || |||||||| | ||| | Sbjct 34474 CCCTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACG 34415 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || |||||||| || || ||| | || | || | | |||||| ||| Sbjct 34414 ATCCGCAGCTCCAACCTTTGCTGCGAGATCGTCGAGTACACTGCCCCTGATGAGGTCGCT 34355 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCC 112465 || || ||| | || || | |||||||| Sbjct 34354 GTCTGCAACTTGGCCTCGCTGGCTCTCCC 34326 >seq794 Length=14906 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||||||||||||| || |||||| | | || | |||||||||||||| ||| Sbjct 5301 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 5360 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 102323 |||||||| |||||| ||||||||||||||| || || ||||| ||||| | ||| Sbjct 5361 CTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGTGATGAGGGCATGCACACC 5420 Query 102324 GAGTTTGC 102331 || ||||| Sbjct 5421 GACTTTGC 5428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713131995840