Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq313 109 6e-19 seq631 100 3e-16 >seq313 Length=54589 Score = 109 bits (120), Expect = 6e-19 Identities = 295/448 (66%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 110373 ACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGT 110432 ||| | |||||| || || ||| |||||| |||||| || |||||| | ||| | Sbjct 34418 ACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTT 34477 Query 110433 ACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG 110491 ||| || || ||| | || ||||||||| | ||| | | || | | || |||| || Sbjct 34478 ACCCGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGCTTCTGAG-CGCGGACCGTCT 34536 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 | || |||| |||| |||||||| ||| | |||| || || | ||| || | Sbjct 34537 CACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAA 34596 Query 110552 CATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 |||| | || ||| || || ||| || | ||||| ||| | || || ||| | Sbjct 34597 CATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCGA 34656 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | | |||||||| || ||||||||||| | || |||| ||||| || || | | Sbjct 34657 CACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGGACTT 34716 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 | || | || ||||| ||| || || | || | || || | ||||||||| | Sbjct 34717 CCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAAACTGAAGACGTCGGCGTGCCATGGCT 34776 Query 110732 CGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTG 110788 |||| |||| |||| || ||| ||| || |||||| ||| |||||||| | Sbjct 34777 CGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTAGCGTGCAG 34836 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAAT 110816 || ||| |||| | ||||| ||||| Sbjct 34837 TGTTGTTGTAGACGCGAAGCATGGGAAT 34864 >seq631 Length=10326 Score = 100 bits (110), Expect = 3e-16 Identities = 328/501 (65%), Gaps = 29/501 (6%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 || || ||||| || || | ||||| | || |||| ||| | ||| ||| | ||| Sbjct 2290 TCAAACCGACCAGGACGCATAAGAGCCTTGTCGAGAACATCAGGTCTGTTAGTACCAGCA 2349 Query 11566 ATGACTACAA--TGCCAGTCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | ||| || | ||| ||| || ||||| || || |||| |||||| Sbjct 2350 AGGACGACCACTTGC---TCCGAGGTGTTGAACCCATCCATCTCGGTCAGAATCTGGTTC 2406 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC-------TGCCGAACGCTT--C 11673 | ||| ||| | ||| |||||| |||||| ||| | | ||| | Sbjct 2407 AGCGTGCTTTCTCTCTCGTCGTTGCC------ACCACCAAAGCTTTGCTTAGCTCTTGAC 2460 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 || || | ||||| || ||||||||||| | ||| || || | | || || Sbjct 2461 TTTCCAATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTCCGCGCAGTG 2520 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || ||||| | | |||||||| || |||||||| ||||| | | Sbjct 2521 GCGAACAGATCGCGTACTCTTGAAGGACCAACACCGACAAACATCTCCACGAACTCGGAA 2580 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || | |||||||| ||| || || ||| ||||| || |||| || ||||| | Sbjct 2581 CCGCTG-ACACTGAA-GAATGGCACTCCAGATTCACCGGCAGTGGCCTTTGCAAGGAGCG 2638 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CT 11909 ||||||| ||||| || | ||||| |||| |||||||| ||||| || |||||| || Sbjct 2639 TCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTAGCACCAAGCT 2698 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || |||| |||||| || |||||| || | ||| || |||| |||||| Sbjct 2699 TC--TGGTAGATGCCAGGCTCTTTCAGGAAGCTGACGAATTCCATAATCTCCTGCTTGGC 2756 Query 11970 GGAGTCGATACCCTCAACATC 11990 ||| || || | ||||| Sbjct 2757 CTCGTCCATTCCGGCCACATC 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948229781600