Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq313 102 1e-16 seq794 95.1 1e-14 >seq313 Length=54589 Score = 102 bits (112), Expect = 1e-16 Identities = 343/531 (65%), Gaps = 11/531 (2%) Strand=Plus/Plus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || ||||| ||||| ||||| |||||| | |||||||| | || || || Sbjct 34338 GAGGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACGATCTCGCAGCAA 34397 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || ||||| || | ||||||||||| ||||| |||||| |||| Sbjct 34398 AGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 34457 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| |||||| |||| | |||||||| ||| | || |||||| || | ||| | | Sbjct 34458 TTGTACAGCATGAAGGGGTTACCCGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGC 34517 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | || | || | | | | || |||||| |||||||| ||| || || Sbjct 34518 TTCTG-AGCGCGGACCGTCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGC 34576 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || ||||| || || | || | || || || || || || || | || | Sbjct 34577 CTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGT 34636 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| || || ||| || || |||||||| || || |||||||| || | | || Sbjct 34637 CCAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 34696 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 || || | | ||| | || || | || ||||| || | || ||||| | Sbjct 34697 CAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAAACTGAA 34756 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 106941 || || |||||||||||||| || |||| |||| | ||| ||||| || Sbjct 34757 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCC---GGACGCTTGTTGCC 34813 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | | || | || ||||| || ||| ||| | ||||||||||| ||||| Sbjct 34814 ACCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAAT 34864 >seq794 Length=14906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 335/517 (65%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || || |||||| ||||| Sbjct 5716 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCTGAGCGAAATGTTCTCCATG 5657 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099 ||||| || || || | ||||| | | | || | | | | || || Sbjct 5656 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTGCCGAGCGCCACC------AGC 5603 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || |||| || |||| ||||||| | |||| | | ||||| |||| ||| Sbjct 5602 AGGCGGTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGA 5543 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || ||| | |||| | ||||| || || || ||||| | | ||| Sbjct 5542 GCGACGGGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATC 5483 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAA 117278 | | || |||| |||| || || | || | ||| ||| |||||| Sbjct 5482 CTCTCAACAGCCTCGGGGCTGGG-CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAA 5424 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| | |||||||| |||||||| || || || |||||| || || ||||| Sbjct 5423 GTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 5364 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 |||||| |||||||| | ||| | || | | ||| || ||| ||||||||||||||| Sbjct 5363 GAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTC 5304 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATT 117457 || || || |||| || ||| ||||||| |||| |||| || | ||| Sbjct 5303 GACGGCGGCGAAGGCAATCAGACGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAGC 5245 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 || ||||| | |||||| ||| || || || || Sbjct 5244 GCAGAGCCCAGTCGGCCTTCCTCTTGATGCAGGGAAC 5208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952982405280