Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq313 102 1e-16
seq794 95.1 1e-14
>seq313
Length=54589
Score = 102 bits (112), Expect = 1e-16
Identities = 343/531 (65%), Gaps = 11/531 (2%)
Strand=Plus/Plus
Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528
|| ||||| ||||| ||||| |||||| | |||||||| | || || ||
Sbjct 34338 GAGGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACGATCTCGCAGCAA 34397
Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588
| |||||| || ||||| || | ||||||||||| ||||| |||||| ||||
Sbjct 34398 AGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 34457
Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647
||||| |||||| |||| | |||||||| ||| | || |||||| || | ||| | |
Sbjct 34458 TTGTACAGCATGAAGGGGTTACCCGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGC 34517
Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707
|| | || | || | | | | || |||||| |||||||| ||| || ||
Sbjct 34518 TTCTG-AGCGCGGACCGTCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGC 34576
Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767
|| ||||| || || | || | || || || || || || || | || |
Sbjct 34577 CTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGT 34636
Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827
||| || || ||| || || |||||||| || || |||||||| || | | ||
Sbjct 34637 CCAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 34696
Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887
|| || | | ||| | || || | || ||||| || | || ||||| |
Sbjct 34697 CAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAAACTGAA 34756
Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 106941
|| || |||||||||||||| || |||| |||| | ||| ||||| ||
Sbjct 34757 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCC---GGACGCTTGTTGCC 34813
Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992
| | || | || ||||| || ||| ||| | ||||||||||| |||||
Sbjct 34814 ACCCTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAAT 34864
>seq794
Length=14906
Score = 95.1 bits (104), Expect = 1e-14
Identities = 335/517 (65%), Gaps = 16/517 (3%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| ||||| |||||||| |||||||||||||| || || |||||| |||||
Sbjct 5716 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCTGAGCGAAATGTTCTCCATG 5657
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099
||||| || || || | ||||| | | | || | | | | || ||
Sbjct 5656 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTGCCGAGCGCCACC------AGC 5603
Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159
|| || |||| || |||| ||||||| | |||| | | ||||| |||| |||
Sbjct 5602 AGGCGGTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGA 5543
Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219
|| || || ||| | |||| | ||||| || || || ||||| | | |||
Sbjct 5542 GCGACGGGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATC 5483
Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAA 117278
| | || |||| |||| || || | || | ||| ||| ||||||
Sbjct 5482 CTCTCAACAGCCTCGGGGCTGGG-CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCAAA 5424
Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338
|| ||| | |||||||| |||||||| || || || |||||| || || |||||
Sbjct 5423 GTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 5364
Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398
|||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||||
Sbjct 5363 GAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTC 5304
Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATT 117457
|| || || |||| || ||| ||||||| |||| |||| || | |||
Sbjct 5303 GACGGCGGCGAAGGCAATCAGACGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAGC 5245
Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494
|| ||||| | |||||| ||| || || || ||
Sbjct 5244 GCAGAGCCCAGTCGGCCTTCCTCTTGATGCAGGGAAC 5208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589952982405280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |