Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq415 131 4e-25 seq213 111 3e-19 seq2834 98.7 2e-15 >seq415 Length=72904 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| |||||||| || ||||| ||||| |||| || || | |||||||| Sbjct 7899 ACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 7958 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || || || |||||||||||||| || || || Sbjct 7959 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGG 8018 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || || || |||||||| | ||||| Sbjct 8019 ATCTTGCTCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTG 8078 Query 195112 CCTGT 195116 || || Sbjct 8079 CCGGT 8083 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 194948 ACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGA 195007 |||| || || || ||||| || | || || | || || || ||||||||||| |||| Sbjct 7404 ACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGA 7463 Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067 |||| || || || || || || || ||||| ||||||||||| || || ||| || | Sbjct 7464 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGACTTCACAT 7523 Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTA 195127 | || || |||||||| || ||||| | ||| | ||||| || || | || || | Sbjct 7524 TGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGA 7583 Query 195128 CGAACACTTGCAT 195140 |||| | |||||| Sbjct 7584 CGAAGATTTGCAT 7596 >seq213 Length=68309 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| ||||||||||| || |||||||| Sbjct 7740 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 7681 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || |||||||| || ||||| || || || |||||| || || Sbjct 7680 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 7621 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || || | || || ||||| Sbjct 7620 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 7562 >seq2834 Length=116819 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || ||||| || | ||| || | ||||| ||| Sbjct 83377 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCG 83436 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| || || || ||||| || || ||||| || |||||| Sbjct 83437 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 83493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109427980141124