Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq622 104 2e-17 >seq622 Length=30049 Score = 104 bits (114), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 || ||| ||| ||||| ||||| ||||| ||| || | || ||||| || |||||| Sbjct 5577 GGGAAGTCTCTTGGCTCTCTCTCCAGCTGCACCTTTAGTGCGTCGACGTGGTCGAGGTAG 5636 Query 29827 ACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 || || || || |||| |||||| | ||| | | || || || | |||||| || Sbjct 5637 ACATGGGCATCGCCCATGGTGTGCGTCAACGTGCCAGGGGTC-AGATGGCAGACGTGCGC 5695 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 || ||||| ||||||||||| ||| || ||||| || || || ||||| |||||||| Sbjct 5696 CAGCATGTGCGTGAGGAGAGCGTACGACGCAATGTTGAAAGGCACGCCGAGACCCATGTC 5755 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 | |||| ||| || ||| | || |||| | ||| ||||| Sbjct 5756 GCAAGACCGCTGATAAAGCAGGCAGTGGAGCACCCCG-CGCTC 5797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408598815338156