Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq313 185 2e-41 seq794 163 5e-35 >seq313 Length=54589 Score = 185 bits (204), Expect = 2e-41 Identities = 496/740 (67%), Gaps = 19/740 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | || |||| | |||||| || || Sbjct 34340 GGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACGATCTCGCAGCAAAG 34399 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || ||| || || |||| || || || |||||| ||| ||| | |||| Sbjct 34400 GTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTG-CAGTGATCCT 34458 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| ||||| || ||||| | ||| ||| | ||||| || |||||| | Sbjct 34459 TGTACAGCATGAAGGGGTTACCCGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGCT 34518 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAG 221947 |||| |||| |||||| || | | || |||||| ||| || ||| | ||| || Sbjct 34519 -TCTGAGCGCGGACCGTC-TCACGGCCGCGACCCTC---CTTCTCGTACTGCTCGTAAAG 34573 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | | |||| || || || | || |||| || || ||| | ||| ||||| Sbjct 34574 AGCCT--CGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATG 34631 Query 222008 AGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || ||||| ||| ||| | | ||| | | ||||||||| || || ||||| || || Sbjct 34632 AGGGTCCAGGTGCC-GTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGC 34690 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA-AA 222125 | || || || | | ||| |||||| ||||| ||| || | ||||| | || Sbjct 34691 GTAGAACAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAA 34750 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||| || | ||| |||||||| ||||| || |||| ||| | || || || ||||||| Sbjct 34751 ACTGAAGAC-GTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGT 34809 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| | || | | | ||| | |||| ||| |||||| | || | || Sbjct 34810 TGCCACCCTGGT-CAACGTAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAG 34868 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 |||||| || |||||||| |||||| ||| ||| | | | | || Sbjct 34869 CCGTTGCTAGTGCCATTGGTGCCAGCAATGTAGCTACCAGTGGCACGGATGCGATGAACA 34928 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | ||||| || || ||| || ||||||||||||||| ||||||||||||| | Sbjct 34929 TTGAGACCGATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAG 34988 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 ||||| || || |||||||| | | | || || ||||||| || ||||| ||| Sbjct 34989 ATGCCGTCGATGCTATCCTCCTTCATATCGATGAGGAAGCAAGACGCCAACTGAGGCTTG 35048 Query 222425 GTGGAACAGGCGTTAAACAG 222444 | || | ||||| ||||| Sbjct 35049 GGGGTTCCAGCGTTGAACAG 35068 >seq794 Length=14906 Score = 163 bits (180), Expect = 5e-35 Identities = 343/515 (67%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| |||||||||||||||| ||||| || |||||| | | ||| | | || Sbjct 5211 CCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACC 5270 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | ||| ||| | ||||| || || || ||||| ||||| |||||||| || || Sbjct 5271 TTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC 5330 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || ||||||||| || ||| ||||||||| Sbjct 5331 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAG 5390 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 ||||| | | || ||||| | |||| || |||||||||||||| | | || ||| Sbjct 5391 CTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCG---CAC 5447 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | || || | ||| | || | || ||||||| |||||||| || ||| Sbjct 5448 ATCAAGTCGAAGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATC 5507 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||||||||||| | | |||||||| || ||| Sbjct 5508 GAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTC 5567 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 ||| |||| ||||| |||| || || |||| ||||| ||| | ||| || | | Sbjct 5568 ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGC-GCTCGGCAACAAGAA 5626 Query 26229 ACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 ||||| |||| | ||||| |||||||| ||||| ||||| ||| | || ||| Sbjct 5627 GTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCAAG 5684 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||| || ||| | || || ||||| || Sbjct 5685 ACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 5719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || |||||||| || Sbjct 4822 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATTGACCTC 4881 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | ||| ||||| ||| || ||| | Sbjct 4882 TCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCC 4941 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || ||||| || ||||||||||| || |||| | Sbjct 4942 CACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGAGCGC 5001 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || |||||||| |||||||| Sbjct 5002 TTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 5054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928801004967680