Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq794 95.1 1e-14 seq631 91.5 2e-13 >seq794 Length=14906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 335/517 (65%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCG 65066 || || || || ||| |||||| | ||||| || ||| | || |||| |||| Sbjct 5208 GTTCCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCG 5267 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||||| ||| || |||| || || || ||||||||||||||| ||| || Sbjct 5268 A-CCTTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTC 5326 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | || | ||| | |||||||| ||||||||||| || || |||||| || Sbjct 5327 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAA 5386 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG-A 65245 || || |||||||| |||||||| | ||| || |||||| ||| ||| | | Sbjct 5387 CGAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCA 5446 Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305 | | || || |||| |||| || | | ||| | | ||||| || || | Sbjct 5447 CATCAAGTCGAAG-CCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATA 5505 Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365 | ||||| | |||| | ||| || || || ||| |||| ||||| | | Sbjct 5506 TCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGC 5565 Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCA 65424 |||| | ||||||| |||| || |||| || || || || | | | | || Sbjct 5566 TCATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCT------GGTGGCGCTCGGCA 5619 Query 65425 CCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 | | | ||||| | || || || ||||| ||||| |||||| || | Sbjct 5620 ACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCG 5679 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | |||||||||||||| |||||||| ||||| ||||| Sbjct 5680 GCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 5716 >seq631 Length=10326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/327 (67%), Gaps = 21/327 (6%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||| || ||||| || ||||| |||| | ||| || ||||| || ||||| || Sbjct 2694 TGGTGCTAAAATCCCGCGTGGCGCTATTCTTTCTGGTCCTCCCGGTACCGGTAAGACGCT 2635 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CA 175392 ||| || |||| || |||||||| || |||||| || |||| || || | | Sbjct 2634 CCTTGCAAAGGCCACTGCCGGTGAATCTGGAGTGCCATTCTTC-AGTG-TCAGCGGTTCC 2577 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | || |||||||||||||| ||||| ||| | ||| || |||||||| || | | Sbjct 2576 GAGTTCGTGGAGATGTTTGTCGGTGTTGGTCCTTCAAGAGTACGCGATCTGTTCGCCACT 2517 Query 175453 GCCCGCGAAAATCA-ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG-C 175510 || || ||| | || || || || | ||||| ||||| || || || | || ||| | Sbjct 2516 GCGCG-GAAGAGCACGCCTTGCATCATTTTCATCGATGAAATCGACGCCATTGGAAAGTC 2458 Query 175511 AA--------CGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 || | ||| ||||||| | || |||||||||||| || | || Sbjct 2457 AAGAGCTAAGCAAAGCTTTGGTGGT------GGCAACGACGAGAGAGAAAGCACGCTGAA 2404 Query 175563 TCAACTACTCACCGAGATGGATGGCTT 175589 || | || |||||||||||||| || Sbjct 2403 CCAGATTCTGACCGAGATGGATGGGTT 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596541471743360