Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq794 95.1 1e-14
seq631 91.5 2e-13
>seq794
Length=14906
Score = 95.1 bits (104), Expect = 1e-14
Identities = 335/517 (65%), Gaps = 16/517 (3%)
Strand=Plus/Plus
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCG 65066
|| || || || ||| |||||| | ||||| || ||| | || |||| ||||
Sbjct 5208 GTTCCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCG 5267
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
||||||| ||| || |||| || || || ||||||||||||||| ||| ||
Sbjct 5268 A-CCTTCGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTC 5326
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
||| | | || | ||| | |||||||| ||||||||||| || || |||||| ||
Sbjct 5327 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAA 5386
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG-A 65245
|| || |||||||| |||||||| | ||| || |||||| ||| ||| | |
Sbjct 5387 CGAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCA 5446
Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305
| | || || |||| |||| || | | ||| | | ||||| || || |
Sbjct 5447 CATCAAGTCGAAG-CCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATA 5505
Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365
| ||||| | |||| | ||| || || || ||| |||| ||||| | |
Sbjct 5506 TCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGC 5565
Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCA 65424
|||| | ||||||| |||| || |||| || || || || | | | | ||
Sbjct 5566 TCATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCT------GGTGGCGCTCGGCA 5619
Query 65425 CCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479
| | | ||||| | || || || ||||| ||||| |||||| || |
Sbjct 5620 ACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCG 5679
Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
| |||||||||||||| |||||||| ||||| |||||
Sbjct 5680 GCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 5716
>seq631
Length=10326
Score = 91.5 bits (100), Expect = 2e-13
Identities = 220/327 (67%), Gaps = 21/327 (6%)
Strand=Plus/Minus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334
|||||| || ||||| || ||||| |||| | ||| || ||||| || ||||| ||
Sbjct 2694 TGGTGCTAAAATCCCGCGTGGCGCTATTCTTTCTGGTCCTCCCGGTACCGGTAAGACGCT 2635
Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CA 175392
||| || |||| || |||||||| || |||||| || |||| || || | |
Sbjct 2634 CCTTGCAAAGGCCACTGCCGGTGAATCTGGAGTGCCATTCTTC-AGTG-TCAGCGGTTCC 2577
Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452
| || |||||||||||||| ||||| ||| | ||| || |||||||| || | |
Sbjct 2576 GAGTTCGTGGAGATGTTTGTCGGTGTTGGTCCTTCAAGAGTACGCGATCTGTTCGCCACT 2517
Query 175453 GCCCGCGAAAATCA-ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG-C 175510
|| || ||| | || || || || | ||||| ||||| || || || | || ||| |
Sbjct 2516 GCGCG-GAAGAGCACGCCTTGCATCATTTTCATCGATGAAATCGACGCCATTGGAAAGTC 2458
Query 175511 AA--------CGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562
|| | ||| ||||||| | || |||||||||||| || | ||
Sbjct 2457 AAGAGCTAAGCAAAGCTTTGGTGGT------GGCAACGACGAGAGAGAAAGCACGCTGAA 2404
Query 175563 TCAACTACTCACCGAGATGGATGGCTT 175589
|| | || |||||||||||||| ||
Sbjct 2403 CCAGATTCTGACCGAGATGGATGGGTT 2377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596541471743360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |