Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq415 297 3e-75 seq213 132 6e-26 seq3195 93.3 6e-14 >seq415 Length=72904 Score = 297 bits (328), Expect = 3e-75 Identities = 555/813 (68%), Gaps = 13/813 (2%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| || || || ||||||| || || ||||| || || || || || | || Sbjct 23053 GCTCTCCGCCGCCTGCGGACTGCCTGCGAGCGTGCTAAGCGCACCCTGTCCAGCTCTGCC 22994 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || | | ||||| || || |||| || || ||||||||||| || | || ||| Sbjct 22993 CAGACCTCGATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCTACACCTCGATCACC 22934 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | || | || | ||||| || || || Sbjct 22933 CGTGCCCGTTTCGAGGAGCTGTGCCAGGACCTCTTCCGCTCTACCATGGAGCCCGTCGAG 22874 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || || || ||||| ||||| || ||||| || | || ||||||||||| || Sbjct 22873 CGTGTCCTCCGCGACGCCAAGATCGACAAGTCGTCCGTCCACGAGATTGTCCTTGTCGGT 22814 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 || || |||||||| || ||||| || ||||| | || ||||||||| || || Sbjct 22813 GGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTCTCCGACTTCTTCAACGGCAAGGAG 22754 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| || || || ||||| || ||||| || || ||||||||| Sbjct 22753 CCCAACAAGTCCATCAACCCCGACGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCT 22694 Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472 || || || || ||||| | | | ||||| ||||| ||||| || || | Sbjct 22693 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAACGAGATC--CTGCTGCTCGACG 22639 Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532 |||| ||| | ||||| ||| | || || || |||||||| |||||| | || | Sbjct 22638 TTGCTCCCCTCTCCCTCGGTATCGAGACCGCCGGTGGTGTCATGACTCCTCTCATCAAGC 22579 Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592 | ||||| || || || || |||||| | ||||| || || | ||||| || || | Sbjct 22578 GCAACACCACCATCCCTACCAAGAAGTCGGAGGTCTTCTCCACCTTCTCCGACAACCAGC 22519 Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652 | ||||| | ||||| || | || || || || |||| | ||||| ||| | || | Sbjct 22518 CTGGTGTCCTCATTCAGGTCTTCGAGGGTGAGCGTGCCCGCACCAAGGACAACAACCTGC 22459 Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712 | || | ||||| | || || || || |||| ||| | |||||||| |||||| | | Sbjct 22458 TCGGCAAGTTCGAGCTTACCGGCATCCCCCCTGCGCCCCGCGGTGTTCCCCAGATTGAGG 22399 Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772 | |||||| | || || || ||||| | |||||| | ||| || |||| ||| Sbjct 22398 TCACCTTCGACCTTGATGCCAACGGAATCATGAACGTCTCCGCTCTCGAGAAGGGCACTG 22339 Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832 |||| | | |||||||| || ||||| |||||||| || || || |||||||| |||| Sbjct 22338 GCAAGACCAACAAGATTGTCATCACCAACGACAAGGGTCGTCTGTCCAAGGAGGACATTG 22279 Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGG 196865 | |||||| || || || || ||||||| || Sbjct 22278 AGCGTATGCTTGCCGAGGCCGAGAAGTACAAGG 22246 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 ||||| || || |||||||| ||||| ||||| |||||||| ||||| || |||| | Sbjct 7800 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTCAAGTCG 7741 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||||||||| || || || ||||| || | || || ||||| || Sbjct 7740 AAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 7681 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 |||||||||||||| |||||||| | || |||||| | || |||||||||||||| ||| Sbjct 7680 CAGCTTGAAGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 7621 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | || || |||||| Sbjct 7620 CTCGTCCTCCGCCTCCGTGGTGGT 7597 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||| ||||| |||||||| ||||| ||||| ||| |||| | Sbjct 8083 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 8024 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || ||||||||||||||||| || |||||||| || | || || ||||| || Sbjct 8023 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 7964 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 |||||||||||||| || ||||| | || |||||| |||| |||||||| || || || Sbjct 7963 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 7904 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | || || |||||| Sbjct 7903 CTCGTCCTCCGCCTCCGCGGTGGT 7880 Score = 154 bits (170), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || ||||| || || || || |||||| | || || |||| Sbjct 7601 GTGGTATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGT 7542 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | || ||||||| ||||| || || ||||| || || | Sbjct 7541 CATCGGACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAAGAGGGCATCCCCCCGG 7482 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || || || || |||||||| ||||| || || || ||||||||| | || | Sbjct 7481 ATCAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACT 7422 Query 172037 ACAACGTTCAAAAGGAGT 172054 ||||| | || ||||||| Sbjct 7421 ACAACATCCAGAAGGAGT 7404 >seq213 Length=68309 Score = 132 bits (146), Expect = 6e-26 Identities = 146/193 (76%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 171860 GTAT-GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 |||| ||| | ||| || || ||||| || || || || |||||||||||||| ||||| Sbjct 7550 GTATCGCATAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 7609 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| ||||| || |||| |||||| || || ||||| |||||||| || || Sbjct 7610 TCGGACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 7669 Query 171979 CAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTAC 172038 ||||| || || || || || || || ||||| || ||||| || ||||| | || ||| Sbjct 7670 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTAC 7729 Query 172039 AACGTTCAAAAGG 172051 ||| | || |||| Sbjct 7730 AACATCCAGAAGG 7742 >seq3195 Length=57158 Score = 93.3 bits (102), Expect = 6e-14 Identities = 184/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || ||||| ||||||| || || || ||||| || |||||||| | | || Sbjct 4527 ACCGTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGACGCCGGCTCCATC 4468 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | || ||||| || || || || || || || || || ||| Sbjct 4467 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCCGCTATCGCCTACGGT 4408 Query 195839 CTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | |||| || | || | || || | |||| ||||| ||||||||| Sbjct 4407 CTCGGCTCCGGCAAGTCTGAGAAGGAGAGGAACGTCCTCATCTACGATCTTGGTGGTGGT 4348 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || || | || | || || | ||| || ||||| || ||| Sbjct 4347 ACTTTCGATGTCTCCCTCCTGCACATCCAGGGCGGCGTCTTCACCGTCAAGGCCACCGCT 4288 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || ||||| |||||| | || ||||| Sbjct 4287 GGTGACACCCATCTTGGTGGTCAGGACTTCGA 4256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657831381787840