Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq794 114 1e-20
seq2956 107 2e-18
>seq794
Length=14906
Score = 114 bits (126), Expect = 1e-20
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG-CACA 47116
||||| |||||||| | || | |||||||||||||| | || |||||||| | |||
Sbjct 5505 ATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACG 5564
Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC- 47175
|| |||||| | || || ||||| || ||||| || ||| ||||| |||||| ||||
Sbjct 5565 CTC-ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGG-CAACA 5622
Query 47176 CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235
||| || | || || || || || || || ||| | |||||||||||| ||||
Sbjct 5623 AGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCA 5682
Query 47236 AAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| ||||| || |||||||| || || || || ||
Sbjct 5683 AGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 5716
>seq2956
Length=19536
Score = 107 bits (118), Expect = 2e-18
Identities = 174/248 (70%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 147672 GCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731
||||||| | |||||| ||||||| | | || |||||| | ||||||| ||| |
Sbjct 4592 GCGGCCCGCCCCCTCGTACTGCTCGTAGAGCGCGTCGAACTCGCCCGCGTAGCAGTCGAC 4533
Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCG 147791
|| ||||| |||| ||| |||||||||| ||| | ||||| || || || ||
Sbjct 4532 GAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCCGTCCTGGTCCACCCGGCG 4473
Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA----ATCCT 147847
||| ||||| |||||||||||||||||||| || ||||| || ||| ||||
Sbjct 4472 CATGAACAGGTCCGGCACCCACAGCGCGTAGGCCAGGTCGCGTGC-CCGCAGCTCGTCCT 4414
Query 147848 CGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907
| |||| | |||| || || || | | | ||| |||||||||||| || || |
Sbjct 4413 TGCCGCC---GCTGCGGCCCAGGTTGAGGAAGTCAAAGACGTCGGCGTGCCACGGCTCCA 4357
Query 147908 TGTAGACG 147915
|||||||
Sbjct 4356 GGTAGACG 4349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476588727781920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |