Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq794 114 1e-20 seq2956 107 2e-18 >seq794 Length=14906 Score = 114 bits (126), Expect = 1e-20 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG-CACA 47116 ||||| |||||||| | || | |||||||||||||| | || |||||||| | ||| Sbjct 5505 ATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACG 5564 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC- 47175 || |||||| | || || ||||| || ||||| || ||| ||||| |||||| |||| Sbjct 5565 CTC-ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGG-CAACA 5622 Query 47176 CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235 ||| || | || || || || || || || ||| | |||||||||||| |||| Sbjct 5623 AGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGCGGCA 5682 Query 47236 AAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | ||||| || |||||||| || || || || || Sbjct 5683 AGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 5716 >seq2956 Length=19536 Score = 107 bits (118), Expect = 2e-18 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 147672 GCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731 ||||||| | |||||| ||||||| | | || |||||| | ||||||| ||| | Sbjct 4592 GCGGCCCGCCCCCTCGTACTGCTCGTAGAGCGCGTCGAACTCGCCCGCGTAGCAGTCGAC 4533 Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCG 147791 || ||||| |||| ||| |||||||||| ||| | ||||| || || || || Sbjct 4532 GAGCCCGGGGCACTCGGCCGGGCACATCAGCGTCCAGTCGCCGTCCTGGTCCACCCGGCG 4473 Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA----ATCCT 147847 ||| ||||| |||||||||||||||||||| || ||||| || ||| |||| Sbjct 4472 CATGAACAGGTCCGGCACCCACAGCGCGTAGGCCAGGTCGCGTGC-CCGCAGCTCGTCCT 4414 Query 147848 CGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 | |||| | |||| || || || | | | ||| |||||||||||| || || | Sbjct 4413 TGCCGCC---GCTGCGGCCCAGGTTGAGGAAGTCAAAGACGTCGGCGTGCCACGGCTCCA 4357 Query 147908 TGTAGACG 147915 ||||||| Sbjct 4356 GGTAGACG 4349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476588727781920