Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq794 168 1e-35 seq313 120 4e-21 seq185 91.5 2e-12 seq2579 87.8 3e-11 >seq794 Length=14906 Score = 168 bits (186), Expect = 1e-35 Identities = 214/291 (74%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| | |||||| || ||||||||||| ||||| ||||| || |||||| | | Sbjct 4818 GCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATTG 4876 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCA 1455888 ||||| | ||| | ||||| || | | ||||||||||||| |||| Sbjct 4877 ACCTCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCA 4936 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||||| |||||||| || |||||| |||||||||||| ||||||||| | | Sbjct 4937 TCTCCCACGTTCTCGCCTTCTT-CGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTC 4995 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 4996 GAGCGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATC 5055 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 5056 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 5106 Score = 165 bits (182), Expect = 1e-34 Identities = 192/254 (76%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581 ||||||| ||||||| ||||| |||||||| ||||| | | || ||||||| || || Sbjct 5483 GATCATCATCGAGGCTGTCGATATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGC 5542 Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 || |||||||||| ||||| |||||||||||||||||| || || ||||| |||||| Sbjct 5543 TCTTCTCGGCATGAATGCCAC-GCTCATGTGCCAGTACATCGAGTTC-GTCGCGGACCGC 5600 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 ||||| | |||||||||| | ||||| ||||| | ||||||| ||| | || Sbjct 5601 CTGCTGGTGGCGCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 5659 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760 |||| || |||||| |||||||||||||| |||||| || | ||| || ||| Sbjct 5660 GGAGAACATTTCGCTCAGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 5719 Query 1456761 CAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 5720 GAAGGCTGGTGTCA 5733 Score = 93.3 bits (102), Expect = 6e-13 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| || |||||| ||||| | |||||| ||| || || Sbjct 5226 AAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTCGCATCGC 5280 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || | | ||| ||||| |||||||| ||||| ||| ||| ||| | |||||| Sbjct 5281 GTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCT 5340 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||||||||||||||| |||||||||||||| Sbjct 5341 TCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 5374 >seq313 Length=54589 Score = 120 bits (132), Expect = 4e-21 Identities = 353/539 (65%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||||| || ||| | || ||||| ||| | |||||||| ||||| Sbjct 33943 TGGGACTGGGACAGCGTGAAGGCTGAGATTGCTCAGCACGGCATCCGCAACTCTCTGCTC 33884 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 || || | ||||||||| ||| |||| |||||||| ||| || |||| |||||| Sbjct 33883 GTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTCAACGAGTGTTTCGAG 33824 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||| ||||||||| | ||||| ||||| | ||||| || || |||||| Sbjct 33823 CCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAGTTCCAGGTCGTCAAC 33764 Query 263059 CGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCGG 263118 | | || ||||| | |||| | | |||||||||| | | | |||| Sbjct 33763 CCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCTGATCAGATGAAGAACCGC 33704 Query 263119 CTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCTC 263178 |||| || | | || || | ||| | | || | ||| | || || Sbjct 33703 ATCATCGCTTCCAACGGTTCCATCCAGCAGATCCCCAACAT-----TCCCGAC-GACATC 33650 Query 263179 AAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGCG 263235 ||||| |||| |||||| || |||||| | | | || ||||| | | ||||| Sbjct 33649 AAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGC---ACCATCGTCCAGATGGCT 33593 Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295 ||||| || | ||| | |||||| ||| ||||||||| | || | ||||| Sbjct 33592 GCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCACATGAAAGACCCT 33533 Query 263296 ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 ||| | | ||||||||||||||| || ||| | ||| |||||||||||| Sbjct 33532 ACGATGGGCAAAATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 33473 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGATCAGG 263413 |||||||| || || || | | |||| ||| |||| || || ||||| ||||| |||| Sbjct 33472 ATGTACTACCTCCGTACGCAGGCCGCCGCC-GCGCCAATCCAGTTCACTGTCGACCAGG 33415 Score = 109 bits (120), Expect = 8e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024 |||| ||||| || | || ||||||| ||| ||||| |||||||| ||||| |||| Sbjct 35034 CGTCTTGCTTCCTCATCGATATGAAGGAGGATAGCATCGACGGCATCTACGACACTCTCA 34975 Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084 || ||||| | ||||||||| | || || ||||||||| | | || | | Sbjct 34974 AGACCTGCGCCATGATCTCCAAGACCGCTGGAGGCATCGGTCTCAATGTTCATCGCATCC 34915 Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144 | ||| | || |||| | || |||||||| ||| ||||||| | | ||||||| Sbjct 34914 GTGCCACTGGTAGCTACATTGCTGGCACCAATGGCACTAGCAACGGCTTGATTCCCATGC 34855 Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||| | ||| |||| || |||||||| |||||| Sbjct 34854 TTCGCGTCTACAACAACACTGCACGCTACGTTGACCAG 34817 >seq185 Length=11357 Score = 91.5 bits (100), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 |||||| || || ||| ||| | || || || ||||||||| |||| ||||||| ||| Sbjct 7326 GACCTGATCTCGCTGGGTGCCATTGGCGCACGTACCACCGAGTCCCAGTTGCACCGTGAG 7385 Query 165813 ATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCG 165872 |||| || | ||| | |||||||||||||| ||| |||||||||| ||| ||| Sbjct 7386 CTGGCCTCCGGTCTGTCCTACCCCATTGGCTTCAAGAACGGCACCGACGGTAGCCTGGGT 7445 Query 165873 ACGGCCCTCGATGCC 165887 ||| |||||||| Sbjct 7446 GTCGCCGTCGATGCC 7460 >seq2579 Length=29721 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 1571189 GCAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCT 1571248 ||||||||| || | ||||||||||| ||| |||||||||| ||||||| | |||| Sbjct 24067 GCAGGTGCCGCTCATCCTGGCGTGGGCGCTGAGCATCCACAAGGCCCAGGGCCAGACGCT 24008 Query 1571249 GGACCGGGCCGTC-ATCTCGA--TGAGCGGCATCTTTGACTGTGGCCAGGCCTACGTGGC 1571305 ||| || |||| | |||| | || || |||| || |||||||| |||||||| Sbjct 24007 GGAGCG---CGTCAAGGTCGACCTCGGCCGCGTCTTCGAGAAGGGCCAGGCGTACGTGGC 23951 Query 1571306 GCTGTCGCGC 1571315 |||||||||| Sbjct 23950 GCTGTCGCGC 23941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177447383667064