Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq794 168 1e-35
seq313 120 4e-21
seq185 91.5 2e-12
seq2579 87.8 3e-11
>seq794
Length=14906
Score = 168 bits (186), Expect = 1e-35
Identities = 214/291 (74%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831
|| ||| ||| | |||||| || ||||||||||| ||||| ||||| || |||||| | |
Sbjct 4818 GCAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAGATTG 4876
Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCA 1455888
||||| | ||| | ||||| || | | ||||||||||||| ||||
Sbjct 4877 ACCTCTCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCA 4936
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| ||||| |||||||| || |||||| |||||||||||| ||||||||| | |
Sbjct 4937 TCTCCCACGTTCTCGCCTTCTT-CGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTC 4995
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| ||||| | |||||||| | || ||||| || | || ||||| |||||||||
Sbjct 4996 GAGCGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATC 5055
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059
|| || ||||||||||| || |||||||||||||| |||||||| |||
Sbjct 5056 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACGTAC 5106
Score = 165 bits (182), Expect = 1e-34
Identities = 192/254 (76%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1456522 GATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGC 1456581
||||||| ||||||| ||||| |||||||| ||||| | | || ||||||| || ||
Sbjct 5483 GATCATCATCGAGGCTGTCGATATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGC 5542
Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641
|| |||||||||| ||||| |||||||||||||||||| || || ||||| ||||||
Sbjct 5543 TCTTCTCGGCATGAATGCCAC-GCTCATGTGCCAGTACATCGAGTTC-GTCGCGGACCGC 5600
Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701
||||| | |||||||||| | ||||| ||||| | ||||||| ||| | ||
Sbjct 5601 CTGCTGGTGGCGCTCGGCAACA-AGAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 5659
Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760
|||| || |||||| |||||||||||||| |||||| || | ||| || |||
Sbjct 5660 GGAGAACATTTCGCTCAGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 5719
Query 1456761 CAAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 5720 GAAGGCTGGTGTCA 5733
Score = 93.3 bits (102), Expect = 6e-13
Identities = 115/154 (75%), Gaps = 9/154 (6%)
Strand=Plus/Plus
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
|||||||||||||| || |||||| ||||| | |||||| ||| || ||
Sbjct 5226 AAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTCGCATCGC 5280
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241
| || | | ||| ||||| |||||||| ||||| ||| ||| ||| | ||||||
Sbjct 5281 GTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCT 5340
Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
| ||||||||||||||||| ||||||||||||||
Sbjct 5341 TCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCT 5374
>seq313
Length=54589
Score = 120 bits (132), Expect = 4e-21
Identities = 353/539 (65%), Gaps = 14/539 (3%)
Strand=Plus/Minus
Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938
|||||||||||| || ||| | || ||||| ||| | |||||||| |||||
Sbjct 33943 TGGGACTGGGACAGCGTGAAGGCTGAGATTGCTCAGCACGGCATCCGCAACTCTCTGCTC 33884
Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998
|| || | ||||||||| ||| |||| |||||||| ||| || |||| ||||||
Sbjct 33883 GTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTCAACGAGTGTTTCGAG 33824
Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058
|||| ||||||||| | ||||| ||||| | ||||| || || ||||||
Sbjct 33823 CCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCTGGCGAGTTCCAGGTCGTCAAC 33764
Query 263059 CGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCGG 263118
| | || ||||| | |||| | | |||||||||| | | | ||||
Sbjct 33763 CCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTGTGGTCTGATCAGATGAAGAACCGC 33704
Query 263119 CTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCTC 263178
|||| || | | || || | ||| | | || | ||| | || ||
Sbjct 33703 ATCATCGCTTCCAACGGTTCCATCCAGCAGATCCCCAACAT-----TCCCGAC-GACATC 33650
Query 263179 AAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATATGGCG 263235
||||| |||| |||||| || |||||| | | | || ||||| | | |||||
Sbjct 33649 AAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCGC---ACCATCGTCCAGATGGCT 33593
Query 263236 GCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCG 263295
||||| || | ||| | |||||| ||| ||||||||| | || | |||||
Sbjct 33592 GCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAACATCCACATGAAAGACCCT 33533
Query 263296 ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355
||| | | ||||||||||||||| || ||| | ||| ||||||||||||
Sbjct 33532 ACGATGGGCAAAATCACGTCGATGCACTTTGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 33473
Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCC-ATTCAATTCACCGTCGATCAGG 263413
|||||||| || || || | | |||| ||| |||| || || ||||| ||||| ||||
Sbjct 33472 ATGTACTACCTCCGTACGCAGGCCGCCGCC-GCGCCAATCCAGTTCACTGTCGACCAGG 33415
Score = 109 bits (120), Expect = 8e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024
|||| ||||| || | || ||||||| ||| ||||| |||||||| ||||| ||||
Sbjct 35034 CGTCTTGCTTCCTCATCGATATGAAGGAGGATAGCATCGACGGCATCTACGACACTCTCA 34975
Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084
|| ||||| | ||||||||| | || || ||||||||| | | || | |
Sbjct 34974 AGACCTGCGCCATGATCTCCAAGACCGCTGGAGGCATCGGTCTCAATGTTCATCGCATCC 34915
Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144
| ||| | || |||| | || |||||||| ||| ||||||| | | |||||||
Sbjct 34914 GTGCCACTGGTAGCTACATTGCTGGCACCAATGGCACTAGCAACGGCTTGATTCCCATGC 34855
Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
||||||| | ||| |||| || |||||||| ||||||
Sbjct 34854 TTCGCGTCTACAACAACACTGCACGCTACGTTGACCAG 34817
>seq185
Length=11357
Score = 91.5 bits (100), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812
|||||| || || ||| ||| | || || || ||||||||| |||| ||||||| |||
Sbjct 7326 GACCTGATCTCGCTGGGTGCCATTGGCGCACGTACCACCGAGTCCCAGTTGCACCGTGAG 7385
Query 165813 ATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCG 165872
|||| || | ||| | |||||||||||||| ||| |||||||||| ||| |||
Sbjct 7386 CTGGCCTCCGGTCTGTCCTACCCCATTGGCTTCAAGAACGGCACCGACGGTAGCCTGGGT 7445
Query 165873 ACGGCCCTCGATGCC 165887
||| ||||||||
Sbjct 7446 GTCGCCGTCGATGCC 7460
>seq2579
Length=29721
Score = 87.8 bits (96), Expect = 3e-11
Identities = 99/130 (76%), Gaps = 6/130 (5%)
Strand=Plus/Minus
Query 1571189 GCAGGTGCCCCTGCTGCTGGCGTGGGCCATGACCATCCACAAGTGCCAGGGCATGTCGCT 1571248
||||||||| || | ||||||||||| ||| |||||||||| ||||||| | ||||
Sbjct 24067 GCAGGTGCCGCTCATCCTGGCGTGGGCGCTGAGCATCCACAAGGCCCAGGGCCAGACGCT 24008
Query 1571249 GGACCGGGCCGTC-ATCTCGA--TGAGCGGCATCTTTGACTGTGGCCAGGCCTACGTGGC 1571305
||| || |||| | |||| | || || |||| || |||||||| ||||||||
Sbjct 24007 GGAGCG---CGTCAAGGTCGACCTCGGCCGCGTCTTCGAGAAGGGCCAGGCGTACGTGGC 23951
Query 1571306 GCTGTCGCGC 1571315
||||||||||
Sbjct 23950 GCTGTCGCGC 23941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177447383667064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |