Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq415 100 3e-16 seq213 93.3 4e-14 >seq415 Length=72904 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || ||| || | || || |||||||| || || || Sbjct 7916 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 7975 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| ||||| || ||||| ||| |||||| ||| | || Sbjct 7976 GATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTGA-CGT 8034 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| ||| || ||||| | ||||| || || || || Sbjct 8035 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || || |||||||| || || || Sbjct 7633 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCTTCAAGCTGCTTGCCAGCGAA 7692 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| || | || ||||||||| |||||| ||| | | | Sbjct 7693 GATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCGACTTGACATT 7752 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | ||||| || || ||||| | ||||| || || || |||| Sbjct 7753 GTCGATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 7802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| |||||||||||||| || || Sbjct 7405 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAA 7464 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| || | || ||| ||||| |||||| ||||| | | Sbjct 7465 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGACTTCACATT 7524 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || || |||| ||||| || || || || | || || || Sbjct 7525 GTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 7584 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 7585 GAAGATTTGCAT 7596 >seq213 Length=68309 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| || ||| || | || || |||||||| || || || | Sbjct 7742 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 7683 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| || |||||||||| |||||| ||| | | | Sbjct 7682 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 7623 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||| || || ||||| | ||||| || || ||||| Sbjct 7622 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 7577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450772345081760