Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq313 120 4e-22 seq794 104 3e-17 seq631 87.8 2e-12 >seq313 Length=54589 Score = 120 bits (132), Expect = 4e-22 Identities = 473/738 (64%), Gaps = 7/738 (1%) Strand=Plus/Plus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || |||| || || |||| | |||||| |||||||||| | || || ||| Sbjct 34338 GAGGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCGACGATCTCGCAGCAA 34397 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || || || || | ||||||||| || ||| ||| || |||| Sbjct 34398 AGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 34457 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| |||||| | || | |||||||| |||| || |||||| || | ||||| | Sbjct 34458 TTGTACAGCATGAAGGGGTTACCCGTCTCGACCTGGGCCTCGAGAATGGCGTACCAGAGC 34517 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || | ||| | || || | | | || ||||| | |||||||| ||| || || Sbjct 34518 TTCTG-AGCGCGGACCGTCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGC 34576 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || ||||| || || | |||| ||||| || || | ||||| | ||| | Sbjct 34577 CTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGT 34636 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || || ||| || || ||||||||||| || || |||||||| || |||| Sbjct 34637 CCAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 34696 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || || ||| || |||| || | || || || || | || | || | Sbjct 34697 CAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAAACTGAA 34756 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGC 119191 || || |||||||| || || ||||| | |||| | ||| ||| ||| | Sbjct 34757 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACC 34816 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | |||||| ||| | || |||||||| ||||| | || | | Sbjct 34817 CTGGTCAACGTAGCGTGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCT 34876 Query 119252 TTGGCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 |||||| || || ||| | || | |||| | || || | | | || Sbjct 34877 AGTGCCATTGGTGCCAGCAATGTAGCTAC-CAGTGGCACGGATGCGATGAACATTGAGAC 34935 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || || || ||| ||||| ||||| | ||||| || ||||||| || | Sbjct 34936 CGATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTCGTAGATGCCGT 34995 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 |||| || |||| | ||||||||||||| || || |||||| |||| || | Sbjct 34996 CGATGCTATCCTCCTTCATATCGATGAGGAAGCAAGACGCCAACTGAGGCTTGGGGGTTC 35055 Query 119431 CAGCGTTGAAGAGAGTTG 119448 |||||||||| |||| || Sbjct 35056 CAGCGTTGAACAGAGCTG 35073 >seq794 Length=14906 Score = 104 bits (114), Expect = 3e-17 Identities = 297/445 (67%), Gaps = 14/445 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 ||||| ||||| ||||||||||||||||| ||||| ||| | ||| | | |||||||| Sbjct 5716 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG-CTGAGCGAAATGTTCTCCAT 5658 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | ||| | | | || | || | | || || | Sbjct 5657 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTG-CCGAGCGCCACCAGCAGGC 5599 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTA 129904 | |||| |||| |||| ||||||| |||| | || ||||| |||| || | | Sbjct 5598 GGTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGAGCGA 5539 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | || ||||| ||| | |||| ||||||| || || ||||| || | ||| Sbjct 5538 CG-GGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGATCCTC 5480 Query 129965 TGAATGGTCTCCGTGCCAGG--TCTA-TTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAA 130020 | || | ||| | || || || | ||| | || | ||| || |||||| Sbjct 5479 TCAACAGCCTCGGGGCTGGGCTTCGACTTG----ATGTGCGAGAACAGCAGGCAGGCAAA 5424 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| | ||||| |||||||| ||||| || || |||||| ||||| ||||| Sbjct 5423 GTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAGGTGAGACCGGGCAT 5364 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 |||||| |||||||| | |||||| || | || ||||| ||||||||| ||||| Sbjct 5363 GAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCTC 5304 Query 130141 CACACACGCGAACGCAAAGAGACGC 130165 || ||||| |||| |||||| Sbjct 5303 GACGGCGGCGAAGGCAATCAGACGC 5279 >seq631 Length=10326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAA 14291 ||| || | |||||| |||||||||||||||| ||| || || || | ||| || ||| Sbjct 2460 CTTTCCAATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTC-CGCGCAG 2518 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || | ||| || ||||| | ||| ||||| |||||||||||||| || | || Sbjct 2519 TGGCGAACAGATCGCGTACTCTTGAAGGACCAACACCGACAAACATCTCCACGAACTCGG 2578 Query 14352 --CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | || | ||| | || ||| || || ||||||||| || |||| || ||||| Sbjct 2579 AACCGCTG-ACACT-GAAGAATGGCACTCCAGATTCACCGGCAGTGGCCTTTGCAAGGAG 2636 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 ||||| || || || || || | |||| || ||||| ||||| | |||||| Sbjct 2637 CGTCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTAGCACCA 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406040780320