Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq313 165 9e-36 seq794 109 6e-19 >seq313 Length=54589 Score = 165 bits (182), Expect = 9e-36 Identities = 364/543 (67%), Gaps = 11/543 (2%) Strand=Plus/Minus Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------G 104593 ||||| ||||||||||| | ||| ||| || ||||| || | || | ||| | Sbjct 34864 ATTCCCATGCTTCGCGTCTACAACAACACTGCACGCTACGTTGACCAGGGTGGCAACAAG 34805 Query 104594 CGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTC 104653 |||| ||| | |||| |||| || |||||||||||||| || || | ||| Sbjct 34804 CGTCC---GGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCCGACGTCTTCAGTTTC 34748 Query 104654 CTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCT 104713 || || | || ||||| || | ||||| | ||| ||||| || |||| |||| Sbjct 34747 CTCGATCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGGGCTCGCGACCTGTTCTACGCT 34688 Query 104714 CTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTT 104773 ||||||||||| |||||||||||||| | || ||| ||| |||| ||| | ||| | Sbjct 34687 CTCTGGATTCCTGATCTCTTCATGAAACGTGTCGAGCAGAACGGCACCTGGACCCTCATG 34628 Query 104774 TGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTAC 104833 || || || || || || || | |||| || || ||||| || || |||||| Sbjct 34627 TGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTTATGGAGACGAGTTCGAGGCTCTTTAC 34568 Query 104834 ACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAA 104892 |||||||| | || ||||| | || |||||| | ||| | || | | ||| | Sbjct 34567 GAGCAGTACGAGAAGGAGGGTCGCGGCCGTGAGACGGTCCGCGCT-CAGAAGCTCTGGTA 34509 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 || |||||| || | || |||||| |||| || | |||||| ||||| || ||| Sbjct 34508 CGCCATTCTCGAGGCCCAGGTCGAGACGGGTAACCCCTTCATGCTGTACAAGGATCACTG 34449 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 |||| ||||| || |||||||| | ||| |||| || ||||| || || || Sbjct 34448 CAACCGCAAGAGCAACCAAAAGAACCTTGGTACGATCCGCAGCTCCAACCTTTGCTGCGA 34389 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 ||| | || | || | | |||||| ||||| || ||| | || || | ||||| Sbjct 34388 GATCGTCGAGTACACTGCCCCTGATGAGGTCGCTGTCTGCAACTTGGCCTCGCTGGCTCT 34329 Query 105073 CCC 105075 ||| Sbjct 34328 CCC 34326 >seq794 Length=14906 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||||||||||||| || |||||| | | || | |||||||||||||| ||| Sbjct 5301 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 5360 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 |||||||| |||||| ||||||||||||||| || || ||||| ||||| | ||| Sbjct 5361 CTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCCCGTGATGAGGGCATGCACACC 5420 Query 94948 GAGTTTGC 94955 || ||||| Sbjct 5421 GACTTTGC 5428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233299253280