Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq415 125 2e-23 seq3173 96.9 1e-14 >seq415 Length=72904 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || |||||||| || ||||| || ||||| || || || Sbjct 7877 CATACCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 7936 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||| ||||| | || |||||||| || Sbjct 7937 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGG 7996 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| |||||||| || || ||| || || || || || | || || | | Sbjct 7997 AGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGACGACT 8055 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| ||||| Sbjct 8056 CGACCTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 113 bits (124), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||||||||| || || || || | Sbjct 7590 TTTGCATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGT 7649 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||||||||| || || ||||| ||||| | || ||||| | Sbjct 7650 AGTCGGACAGGGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 7709 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || ||||| || || | || ||||| || || | || || | Sbjct 7710 CCGGGGGGATGCCTTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGAGG 7769 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || ||||| || | ||||| || || | ||| Sbjct 7770 ACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGT 7806 >seq3173 Length=15433 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | ||||| || || |||||||| || Sbjct 4369 CGCGGGACACCAAGCGTGACGTTC---TTCGAAGACACACCGGCGAAATGGAAAGTGTTC 4425 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || || | |||||||||||| |||||||| |||| || |||||||||||| Sbjct 4426 AGAGTCATCTGCGTTGCGGGCTCACCAATGGACTGCGCGGCAAGCACACCAACCATTTCT 4485 Query 377578 CCAGGATTGACAATAGC 377594 || ||| |||| || || Sbjct 4486 CCGGGACTGACGATCGC 4502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515181169648916