Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq313 199 4e-46 seq2956 116 4e-21 >seq313 Length=54589 Score = 199 bits (220), Expect = 4e-46 Identities = 439/649 (68%), Gaps = 8/649 (1%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||||||||||| || | |||||| || || |||||||| | | |||||| Sbjct 35068 CTGTTCAACGCTGGAACCCCCAAGCCTCAGTTGGCGTCTTGCTTCCTCATCGATATGAAG 35009 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || || ||||||||||||||||| || |||||| || ||| ||||||||| Sbjct 35008 GAGGATAGCATCGACGGCATCTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACC 34949 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | || || |||||| || | || || | || ||||||| | || | || | Sbjct 34948 GCTGGAGGCATCGGTCTCAA-TGTTC-ATCGCATCCGTGCCACTGGTAGCTACATTGCTG 34891 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || || ||| | | || | | || ||||| ||||||| ||||||||| || | Sbjct 34890 GCACCAATGGCACTAGCAACGGCTTGATTCCCATGCTTCGCGTCTACAACAACACTGCAC 34831 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| |||||||||| ||||| ||| | |||||||||||||||||||| | Sbjct 34830 GCTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCTCGAGCCAT 34771 Query 53592 GGCACGCCGACATTATGGAGTTTC-TCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | |||||| |||| || || ||| || || | || || | Sbjct 34770 GGCACGCCGACGTCTTC-AGTTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAAGTC 34712 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || || |||||||| ||| ||||| |||||||| || ||||||||| || || || Sbjct 34711 CGGGCTCGCGACCTGTTCTAC-GCTCTCTGGATTCCTGATCTCTTCATGAAACGTGTCGA 34653 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | || ||| ||| ||| |||||||| ||||||||||| || || | ||| || Sbjct 34652 GCAGAACGGCACCTGGACCCTCATGTGCCCCAACGAGTGCCCGGGGCTGGCAGATGTTTA 34593 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829 || || ||||| | | | || | ||||| |||| ||| | ||| Sbjct 34592 TGGAGACGAGTTCGAGGCTCTTTACGAGCAGTACGAGAAGGAGGGTCGCGGCCGTGAGAC 34533 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 |||| || | || | ||| | || || ||| || |||||| |||||||| | || Sbjct 34532 GGTCCGCGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCCCAGGTCGAGACGGGTAACCC 34473 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| ||||||||| |||| ||||||||||| |||||| Sbjct 34472 CTTCATGCTGTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 34424 Score = 131 bits (144), Expect = 2e-25 Identities = 307/456 (67%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||||| || || ||||| ||||| ||||| ||||||| | Sbjct 33904 GGCATCCGCAACTCTCTGCTCGTCGCACCCATGCCCACCGCCTCGACCAGTCAGATCCTC 33845 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||| ||||||||||||||| | ||||||||| ||||| || || Sbjct 33844 GGCTTCAACGAGTGTTTCGAGCCGTACACGTCGAACATCTACTCTCGCCGTGTGCTGGCT 33785 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || |||| || | || ||| | | ||| |||||||| || | || | | Sbjct 33784 GGCGAGT---TCCAGGTCGTCAACCCCTGGCTCCTCAAGGACTTGGTCGACCTCGGCCTG 33728 Query 55655 TGGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTC---CAGAAT 55708 ||| ||||| |||| || || || | ||| || ||| || |||| Sbjct 33727 TGGTCTGATCAGATGAAGAACCGCATCATCGCTTCCAAC---GGTTCCATCCAGCAGATC 33671 Query 55709 CTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAA 55767 | | ||||| | || | |||||| | | ||| |||||| |||||| || | ||| Sbjct 33670 CCCAACATTCC-CGACGACATCAAGGCGCTCTACAAGACGGTCTGGGAGCTTTCTCAGCG 33612 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 | | | | ||| ||| ||||| ||||| | ||| ||||||||||| || || || Sbjct 33611 CACCATCGTCCAGATGGCTGCCGATCGGGGTGCCTTCATTGACCAGTCCCAATCGCTCAA 33552 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 |||| |||| | | ||| | ||| ||| | | |||||||||||| || ||||| Sbjct 33551 CATCCACATGAAAGACCCTACGATGGGCAAAATCACGTCGATGCACTTTGCTGGCTGGAA 33492 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | || |||||||| || |||||||| || || || Sbjct 33491 GCTCGGTCTCAAGACTGGCATGTACTACCTCCGTAC 33456 >seq2956 Length=19536 Score = 116 bits (128), Expect = 4e-21 Identities = 254/375 (68%), Gaps = 4/375 (1%) Strand=Plus/Plus Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 ||| | ||||||| |||||||||||||||||| | | || || ||| | ||| | | | Sbjct 4345 TCGTCGTCTACCTGGAGCCGTGGCACGCCGACGTCTTTGACTTCCTCAACCTGGGCC-GC 4403 Query 53631 ATCAG-GGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 | | | || | || ||| |||| || |||||| ||| || |||||| | ||||| Sbjct 4404 AGCGGCGGCAAGGACGAGCTGCGGGCACGCGACCTGGCCTAC-GCGCTGTGGGTGCCGGA 4462 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| ||||||| |||||| |||||| || ||| |||||||||||| |||||| Sbjct 4463 CCTGTTCATGCGCCGGGTGGACCAGGACGGCGACTGGACGCTGATGTGCCCGGCCGAGTG 4522 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 |||||| ||| | ||||| | ||||| ||| | | || | ||||| | Sbjct 4523 CCCCGGGCTCGTCGACTGCTACGCGGGCGAGTTCGACGCGCTCTACGAGCAGTACGAGGG 4582 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868 ||||||| | | | | |||||||| | | | | |||| || | || || Sbjct 4583 GGCGGGCCGCGGCCGGCGCACGCTCAAGGCGAGGGCGCTGTGGGCGGCCGTGGTCGAGGT 4642 Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928 ||| |||||||||| ||| | || |||||||| || ||||| |||||||| Sbjct 4643 GCAGATGGAGACGGGCGGGCCAAGCGTGCTGTACAAGGACGCGTGCAACGTCAAGAGCAA 4702 Query 53929 CCAGAAGAACATCGG 53943 ||||||| || |||| Sbjct 4703 CCAGAAGCACCTCGG 4717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190198765600