Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq313 172 6e-38 seq415 138 1e-27 seq213 127 2e-24 seq2834 116 4e-21 >seq313 Length=54589 Score = 172 bits (190), Expect = 6e-38 Identities = 576/883 (65%), Gaps = 29/883 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||||| |||||||| || || ||| ||| ||| |||||||| || Sbjct 33965 CCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGACTGCCCTGGAAGGTCTCGTAGGG 34024 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || | |||||| || ||| ||| | | | || || || || || ||| || Sbjct 34025 ACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATGGATGCATGGTATATAGTCTCGAA 34084 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 | |||| | | || | ||| ||| ||||| | || || | || || Sbjct 34085 AATCTGGATGTTGAG-CTGCTTGGCCTCGGGGGAATCGAAAGGCATGCGAAGAGCCAGGA 34143 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | || || || || | || || | ||||| |||||||| ||| |||| | || | Sbjct 34144 AGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGGTGACGCATGTT-GCTCTTT 34202 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 | |||||| || | ||||| ||| | ||||||| ||||| ||| | Sbjct 34203 CTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAGC 34262 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCC--CTTC-ACAAAT 80892 ||| | ||||| || ||||| |||| |||||| | |||| | | || || || Sbjct 34263 ACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCGTTCTCAACGTCGACGAAG 34322 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | ||| || ||| || |||| ||||| || || ||||| |||| | || ||||| Sbjct 34323 GTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCG 34382 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| || ||| | || || || ||||| ||||| || ||||| |||| Sbjct 34383 ACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTG 34442 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| |||||||| |||| | ||| |||| ||||||||||| | || ||| Sbjct 34443 CGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTTACCCGTCTCGACCTGGGCCTCGAGA 34502 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||| | || | || |||| || ||| || || | | ||| Sbjct 34503 ATGGCGTACCAGAGCTTCTGAGCGCGGACCGTCTCACGGCCGCGACCCTCCTTCTCGTAC 34562 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | ||||| | ||||||| | | || | || || | || | ||||||||||| Sbjct 34563 TGCTCGTAAAGAGCCTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTG 34622 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGG 81249 |||||||| ||| ||| |||| |||| ||| ||| |||||||| ||||| Sbjct 34623 GGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGA 34679 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGC 81307 |||||||| ||| |||||||||||| ||| || | ||||| | || ||||| || Sbjct 34680 ATCCAGAGAGCGTAGAACAGGTCGCG--AGCCCGGACTTCCTCCTTGCCGTGGTTCTTGC 34737 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366 | | ||||| || | || ||| || ||||||||||| || || | ||||| | || Sbjct 34738 GAAGATCGAGGAAACTGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCAC 34797 Query 81367 CC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGT 81404 || |||| ||||||||||| ||||| || ||||| Sbjct 34798 CCGGACGCTTG---TTGCCACCCTGGTCAACGTAGCGTGCAGT 34837 >seq415 Length=72904 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || | || || |||||| Sbjct 7596 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCATCG 7537 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | || || || ||||| ||||| || || || || ||| Sbjct 7536 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGATCAG 7477 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || ||||| | |||||||| | ||||| || Sbjct 7476 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCTCGGACTACAAC 7417 Query 27586 GTCCAAAAGGA 27596 |||| ||||| Sbjct 7416 ATCCAGAAGGA 7406 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | ||| | ||| | Sbjct 7800 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTCAAGTCG 7741 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || || || || ||||||||||| | || || ||||| ||| Sbjct 7740 AAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCAGCGCTTGATCTTCGCTGGCAAG 7681 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || |||| |||||||| | ||||| || |||| ||||| || ||||| || Sbjct 7680 CAGCTTGAAGATGGCCGTACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 7621 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 7620 CTCGTCCTCCGCCTCCGTGGTGG 7598 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 8083 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGAGC 8024 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| || |||||||| | || || ||||| ||| Sbjct 8023 AAGATCCAGGATAAGGAAGGCATTCCTCCGGATCAGCAGCGCTTGATCTTCGCTGGCAAG 7964 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || || |||| || ||||| | ||||| || | || ||||| ||||| |||||| Sbjct 7963 CAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTTCAT 7904 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 7903 CTCGTCCTCCGCCTCCGCGGTGG 7881 >seq213 Length=68309 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| | ||| |||||||| || || |||||||| || || || ||||| ||||| || Sbjct 7555 GCATAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGA 7614 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||| | ||| | ||| || || |||||||||||||| ||||| || |||||||| Sbjct 7615 CACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 7674 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 ||| || || || || || ||||| |||||||||| || ||||| | ||||| || | Sbjct 7675 GCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACAT 7734 Query 27588 CCAAAAGG 27595 ||| |||| Sbjct 7735 CCAGAAGG 7742 >seq2834 Length=116819 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || ||||| ||||| |||||| Sbjct 83492 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAG 83433 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| ||||| ||||| || || || Sbjct 83432 GATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTG 83373 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 83372 CGCCTGCGTGGTGG 83359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283509864640