Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq415 113 3e-20 seq213 113 3e-20 >seq415 Length=72904 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | ||| || |||| ||||||||||| || || || Sbjct 7405 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAA 7464 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||||||||| | || | || || || || ||||| ||||| | Sbjct 7465 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGACTTCACATT 7524 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | || || || |||| || || ||||| || ||||||||||| || Sbjct 7525 GTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 7584 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 7585 GAAGATTTGCAT 7596 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| || |||||||| |||| || ||| | || || Sbjct 7899 ACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 7958 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| ||||||||||| | ||| | |||||||| ||| Sbjct 7959 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGG 8018 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || || ||||| | || || ||||| Sbjct 8019 ATCTTGCTCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTG 8078 Query 44309 CCCGTGA 44315 || |||| Sbjct 8079 CCGGTGA 8085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || || | || || Sbjct 7616 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCTTCA 7675 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| |||||||| || | || | |||||||| ||| Sbjct 7676 AGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 7735 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||| | ||| || ||||| | || || |||| Sbjct 7736 ATCTTCGACTTGACATTGT--CGATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCT 7793 Query 44307 TTCCCGT 44313 | || || Sbjct 7794 TGCCAGT 7800 >seq213 Length=68309 Score = 113 bits (124), Expect = 3e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| ||||| |||| Sbjct 7742 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 7683 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 7682 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 7623 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| |||||||||||||| || Sbjct 7622 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 7565 Query 44326 GAAGATTTGC 44335 |||| | ||| Sbjct 7564 GAAGCTATGC 7555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973850791324