Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02] 3,772 sequences; 34,931,051 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq213 136 4e-27 seq2834 120 3e-22 seq415 118 1e-21 >seq213 Length=68309 Score = 136 bits (150), Expect = 4e-27 Identities = 141/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| |||||||| | || |||||||||||||||||||| | Sbjct 7742 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 7683 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| ||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 7682 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 7623 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || ||||| || ||||| || Sbjct 7622 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 7565 Query 41851 GAA 41853 ||| Sbjct 7564 GAA 7562 >seq2834 Length=116819 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | ||| || || || ||| ||||||||| ||||| ||||| | Sbjct 83357 CGCCACCACGCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 83416 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | |||||||| | || |||||||||||||| ||||| ||||| ||||| ||||||| || Sbjct 83417 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGG 83476 Query 41754 GAACGCTCTCCTTGTCCAT 41772 | | || ||||||||| || Sbjct 83477 GGATGCCCTCCTTGTCTAT 83495 >seq415 Length=72904 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || ||| ||||||||||||||| |||||||| Sbjct 7881 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 7940 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| |||| |||||| || |||| ||| Sbjct 7941 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGA 8000 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 8001 ATGCCTTCCTTATCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCGGACGACTCGAC 8059 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || || || || Sbjct 8060 CTCAAGGGTGATGGTCTTGCCGGT 8083 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 9/208 (4%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| ||||| || | || || ||||||||||| ||||| Sbjct 7633 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCTTCAAGCTGCTTGCCAGCGAA 7692 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788 |||| |||||| ||||||| ||| | || ||||||||| ||| || ||| || Sbjct 7693 GATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCGACTTGACATT 7752 Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | || | ||||| ||||| ||||| | || || || || || |||| || | Sbjct 7753 GTCG--ATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGTGATG 7810 Query 41849 ACGAAAATCTGCATGTTATCGATGGATC 41876 ||| || ||||||| ||||||||| Sbjct 7811 ACG----TCAGCATGTT-GCGATGGATC 7833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282202366400