Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diplodia_20scrobiculata_20[genbank_20GCA_5F001455585.1_202015-12-02]
3,772 sequences; 34,931,051 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq213 136 4e-27
seq2834 120 3e-22
seq415 118 1e-21
>seq213
Length=68309
Score = 136 bits (150), Expect = 4e-27
Identities = 141/183 (77%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| |||||||| | || |||||||||||||||||||| |
Sbjct 7742 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 7683
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||| ||||||| ||||| || |||||||||| ||| || ||| || |
Sbjct 7682 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 7623
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || || ||||| || ||||| ||
Sbjct 7622 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 7565
Query 41851 GAA 41853
|||
Sbjct 7564 GAA 7562
>seq2834
Length=116819
Score = 120 bits (132), Expect = 3e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || || || | ||| || || || ||| ||||||||| ||||| ||||| |
Sbjct 83357 CGCCACCACGCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 83416
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| |||||||| | || |||||||||||||| ||||| ||||| ||||| ||||||| ||
Sbjct 83417 AAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGG 83476
Query 41754 GAACGCTCTCCTTGTCCAT 41772
| | || ||||||||| ||
Sbjct 83477 GGATGCCCTCCTTGTCTAT 83495
>seq415
Length=72904
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || ||||| || ||| ||||||||||||||| ||||||||
Sbjct 7881 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 7940
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| |||| |||||| || |||| |||
Sbjct 7941 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCCGGAGGA 8000
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||| ||| ||| || ||| ||| | | | |||||| |||||| ||
Sbjct 8001 ATGCCTTCCTTATCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCGGACGACTCGAC 8059
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 8060 CTCAAGGGTGATGGTCTTGCCGGT 8083
Score = 104 bits (114), Expect = 2e-17
Identities = 150/208 (72%), Gaps = 9/208 (4%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||||| ||||| || | || || ||||||||||| |||||
Sbjct 7633 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCTTCAAGCTGCTTGCCAGCGAA 7692
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788
|||| |||||| ||||||| ||| | || ||||||||| ||| || ||| ||
Sbjct 7693 GATCAAGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCGACTTGACATT 7752
Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848
| || | ||||| ||||| ||||| | || || || || || |||| || |
Sbjct 7753 GTCG--ATGGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGTGATG 7810
Query 41849 ACGAAAATCTGCATGTTATCGATGGATC 41876
||| || ||||||| |||||||||
Sbjct 7811 ACG----TCAGCATGTT-GCGATGGATC 7833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462282202366400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |