Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16 120 3e-22 seq663 107 2e-18 seq235 93.3 4e-14 seq664 87.8 2e-12 >seq16 Length=352857 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| ||||| |||||||| || | |||||| ||||| Sbjct 17412 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTC 17353 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| ||||||||||||||||||| || || || ||||||||||| Sbjct 17352 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 17293 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | || ||||||| || | || || Sbjct 17292 AATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAGCGTGATAGTCTT 17233 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 17232 TCCAGTCAGGGTCTTGACGAAGATCTGCATG 17202 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || || || |||||| ||||| Sbjct 16950 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTG 16891 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||| | |||||||| || || || |||||||||||||| || || Sbjct 16890 CTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 16831 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||| | ||| | || ||||| || Sbjct 16830 CGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 16771 Query 118715 CA 118716 || Sbjct 16770 CA 16769 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | || || ||||| ||||| || || Sbjct 17171 GTCGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCCAGCTGCTTACCC 17112 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| || || || ||||||||||||||| || || || Sbjct 17111 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGACTTC 17052 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||||| |||||| || | ||| | || |||||||| || || Sbjct 17051 ACGTTGTCGATCGTGTCCGATGACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTC 16992 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 16991 TTGACGAAGATTTGCAT 16975 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||||| ||| || ||||| || || Sbjct 16660 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 16601 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| ||||| ||||| || || || || Sbjct 16600 GCGAAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTG 16541 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| |||||| | ||||||||| | ||| | || |||||||| Sbjct 16540 ACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 16488 >seq663 Length=530868 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||||| |||||||||||| || || ||| |||| Sbjct 493142 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 493083 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 493082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 493023 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||||| | ||||||||||| ||| | || ||||| || || || || || || Sbjct 493022 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 492964 >seq235 Length=704811 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | || ||||| || || |||||||| || | ||||| ||| Sbjct 89968 CAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 90027 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || |||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 90028 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 90087 Query 118646 T 118646 | Sbjct 90088 T 90088 >seq664 Length=348155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 133209 TTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGA-TATAC 133267 |||| ||| | ||||||| || ||||||||||| || || || || | |||| || | Sbjct 292148 TTGAGGAGCCAGGGGTTGACGACCTGAAACTCGCCAGCCAGCACACGGC-GAGAGTAGAT 292206 Query 133268 ATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGT 133327 ||||||||| |||| |||||| | |||||| |||||| ||||| |||| || || Sbjct 292207 GTTCGACGTGTACGGCTCGAAACACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGT 292266 Query 133328 GGGCATGTACGCCACCAACAAAGAGTT 133354 ||||||| || || | || |||||| Sbjct 292267 GGGCATGGGTGCGACGAGCAGAGAGTT 292293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826730608248