Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq678 120 6e-22 seq209 95.1 2e-14 >seq678 Length=62356 Score = 120 bits (132), Expect = 6e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 4314 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTGGCCTACGGTGCCAAGATCCTGCTTAAC 4255 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||| | || || ||||| |||| ||||| || | Sbjct 4254 CAGACCCACCTTCGTCTGAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTTCC 4195 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| |||||| ||||| ||||| |||| ||||| || || ||||| || ||| Sbjct 4194 GGCAAGACCACTCTGATGCGTGCCATCAACAACGAGCAGCTTGAGGGTTTTCCCAA-GCA 4136 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || || || ||||||||| |||||||| Sbjct 4135 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTCC 4093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || |||||||| || |||| ||||| Sbjct 3499 CTCCCGTATTGCCGTCATTGGTCCCAACGGTGCCGGCAAGTCTACTCTCGTCAACGTCCT 3440 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | ||||| ||| || | | || ||||| || || || Sbjct 3439 GACTGGTGAGCTCATCCCCACTTCGGGTGATGTCTACCACCACGAGAACATCCGTATCGC 3380 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||| |||||| || || | Sbjct 3379 CTACATCAAGCAGCACGCTTTCGCCCACATCGACCACCACTTGGACAGCACCCCCTCGGA 3320 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 3319 GTACATCCAGTGGCG 3305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 |||||||||| || || ||||| ||||| |||||| ||||| | ||| | | || Sbjct 2912 CTCACTCTCGTATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTT 2853 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | || ||| ||||||| || ||||||||||||||||| || ||||| Sbjct 2852 GCTC-GTGGCAGCGTCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGT 2794 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || || |||||| Sbjct 2793 GACTCTCTCGGTGCTCTG 2776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 3954 TCGCTTTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 3896 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || ||||| || ||||| ||||||||||||||| || ||||| || ||||| Sbjct 3895 CGATATTCTTCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 3836 Query 279821 AGTGTCCTACCT 279832 | | |||||| Sbjct 3835 CGAGAACTACCT 3824 >seq209 Length=81500 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| |||| ||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 28441 TCATTGGTGCCAACGGTGCTGGCAAGTCCACGCTCATCAAGGTCCTGACTGGCGA-AGTC 28383 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | || | | || | | | |||||| || ||| |||| || | |||| || ||| Sbjct 28382 ATTCCGCAAACCGGCAAGGTCGAGAAGCACCCTAACCTGCGTATTGGTTACATCAAGCAG 28323 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 || ||| | | ||| |||||| ||| |||| | ||| || ||||| ||| | |||||| Sbjct 28322 CATGCTCTTGAGCACGTCGAGATGCACATGGAGAAGACGCCCAACCAGTACTTGCAGTGG 28263 Query 280353 CGCTATGCAAGTGG 280366 || || || | ||| Sbjct 28262 CGTTACGCCAATGG 28249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827660603654