Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq204 116 4e-21 seq16 113 4e-20 seq663 98.7 9e-16 seq664 84.2 2e-11 >seq204 Length=141573 Score = 116 bits (128), Expect = 4e-21 Identities = 296/445 (67%), Gaps = 13/445 (3%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| |||| || |||||| ||||||||| |||||||| ||| ||| || | || Sbjct 65774 CGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCCTCCATC 65833 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || |||||||||| ||||| || ||||||||| || || Sbjct 65834 TTCTGGCTCAAGAAGCGCGGTCTTATGCCCGGTCTCACCTTCTCCAACGAGCTCATTTCC 65893 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACAC-TAGAGTCGATC 47316 | || || ||| |||||||| |||||||||| || || | ||| | |||||| Sbjct 65894 CGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAG 65953 Query 47317 AAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGG 47376 || || | | | || ||| | ||| || |||| || |||| || Sbjct 65954 CCCAGCCC--CGAGGCTGTTGAGAGGATCATCAT---CGAGGCTGTCGATATCGAGAAGG 66008 Query 47377 AGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAA 47436 |||| | | || || ||||||| || | | || ||||| || | | ||| | Sbjct 66009 AGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTCATGTGCC 66068 Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 |||||||||| || ||||| ||||||||||| || ||| | ||||| ||| Sbjct 66069 AGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGGCAA---CAAGAAGTACT 66125 Query 47497 ACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 ||| || | | || ||||| || ||| | |||||||||||| ||||||||||||| Sbjct 66126 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGTGGCAAGACCAACT 66185 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||| || || || || Sbjct 66186 TCTTCGAGAAGCGTGTTGGTGACTA 66210 >seq16 Length=352857 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || ||||| ||||| ||| | Sbjct 16690 CCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 16631 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| ||||||| ||||||||||| ||||| Sbjct 16630 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGA 16571 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| || ||||| |||| |||| |||||| | |||||| Sbjct 16570 ATGCCTTCCTTATCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCGGACGACTCGAC 16512 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 16511 CTCAAGGGTGATGGTCTTGCCGGT 16488 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || ||||| || ||| Sbjct 16943 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCA 16884 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 16883 GCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 16824 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| |||||||| |||||| || | ||| | || ||||| |||| Sbjct 16823 ACATTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 16769 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||| ||| | || ||||| || ||||| ||||| || Sbjct 17201 CCACCGCGCAGACGCAGTACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCCGAG 17142 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||||| |||||||| || || || Sbjct 17141 AGGGTACGGCCGTCCTCCAGCTGCTTACCCGCGAAGATCAGACGCTGCTGGTCCGGGGGG 17082 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||| | |||| |||| ||||||| |||||| Sbjct 17081 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACGTTG-TCGATCGTGTCCGATGACTCGAC 17023 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || |||||||| || || || || || || ||||| Sbjct 17022 TTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 16975 Score = 104 bits (114), Expect = 2e-17 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | || | |||||| || | || ||||| ||||| || ||||| Sbjct 17435 TACTGC-CCACCACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTA 17377 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | |||||| || || ||||| || |||||| |||| | ||||||||||| Sbjct 17376 GTCAGAGAGCGTGCGCCCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATC 17317 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| || || ||| | |||| |||| ||||| | | Sbjct 17316 CGGCGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATCGTGTCGGAAG 17258 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || |||| || | || || || ||||| || || || || ||||||||| Sbjct 17257 ATTCAACCTCGAGCGTGATAGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATG 17202 >seq663 Length=530868 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 493142 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 493083 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 493082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 493023 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||||| |||||| |||| ||| | || ||||| || || || || || || Sbjct 493022 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 492964 >seq664 Length=348155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || | | |||||| ||| | ||||||| |||||||||||||| || || || || Sbjct 292135 GTCGACCAAGTCCTTGAGGAGCCAGGGGTTGACGACCTGAAACTCGCCAGCCAGCACACG 292194 Query 146097 CCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCG 146155 | ||| || | ||| ||| |||||||||| |||||||| ||||| ||||| Sbjct 292195 GC-GAGAGTAGATGTTCGACGTGTACGGCTCGAAACACTCGTTGAAGCCGAGGATCTGAC 292253 Query 146156 CCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||| ||||| |||||| || || |||| |||||| Sbjct 292254 TGGTCGAGGCGGTGGGCATGGGTGCGACGAGCAGAGAGTT 292293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496675030560