Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq224 188 9e-43 seq257 105 8e-18 seq159 104 3e-17 seq5 95.1 2e-14 >seq224 Length=463250 Score = 188 bits (208), Expect = 9e-43 Identities = 384/568 (68%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||| ||| ||||| || || || | ||||| || ||||||||| Sbjct 72 TCGAAGTCCTCGCCACCCAGGTGAGTATCACCGGCAGTGGACTTGACCTCGAAGATACCT 131 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || |||||||| || || || || || | ||| Sbjct 132 TCCTCAATGGTGAGGAGGGAAACATCGAAAGTACCACCGCCAAGATCGAAGATCATGACG 191 Query 7577 TTCGTATC----GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || || || | ||| ||| ||||||||||| ||||| || || || || || Sbjct 192 TTGCGCTCACCAGTAGCCTT----CTTGTCGAGACCGTAGGCGATGGCAGCGGCAGTAGG 247 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || ||||| || ||| |||||||| || | ||||| || || || || Sbjct 248 CTCGTTGATGATACGGAGGACGTTGAGGCCAGCGATGAGACCGGCATCCTTGGTAGCCTG 307 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || ||||| |||||||| ||||| || || || |||| |||| | ||| Sbjct 308 GCGCTGGGAGTCGTTGAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACGGTGCCACC 367 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||| ||||| || || | || |||| ||||| || ||||| || || || || |||| Sbjct 368 GAGGTACGACTCAGCAGTCTCCCTCATCTTGGTCAGGACCATGGAAGAGATTTCCTCAGG 427 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCAC 7871 | || ||| || || || || || || | || | || || | | | | | Sbjct 428 AGTGAAAGTCTTCTCCTCGCCCTTGAACTCGACCTGGATGACAGGCTTGCCACCCTTCTC 487 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 ||| ||||| | | | | ||||||||| | ||||||| ||| |||| Sbjct 488 ----GATGACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCGGCGTCGTTGAACT 543 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | || || || ||||| || || || || ||||| | |||||||||||| |||| Sbjct 544 TGCGGCCAATCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGT 603 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTC 8019 |||| || | ||| ||||| | ||| || Sbjct 604 TCTTTGCGGAGTCACCGATCAAACGCTC 631 >seq257 Length=880677 Score = 105 bits (116), Expect = 8e-18 Identities = 205/302 (68%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | |||||| | || || || || ||||| || ||||| |||| || Sbjct 413814 TCGAAGTCCTGACCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACGCCG 413873 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | |||| | | || ||||| || ||||||||||| || || | ||||| ||| Sbjct 413874 CCCTGGATGTGCAGGAGGGAGACATCGAAAGTACCACCACCAAGATCGTAGATGAGGACG 413933 Query 7577 TTCGTATC---GTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || ||| ||| |||||||||| |||||||| || || || || Sbjct 413934 TTCCTCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCGATAGCGGCGGCGGTGGGC 413993 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| |||||||| || | | || || || || || || Sbjct 413994 TCGTTGATGATACGGAGGACGTTGAGGCCAGCGATGGAGCCGGCGTCCTTGGTAGCCTGA 414053 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || | ||| || | | || ||||| ||| Sbjct 414054 CGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCG 414113 Query 7754 AG 7755 || Sbjct 414114 AG 414115 >seq159 Length=242608 Score = 104 bits (114), Expect = 3e-17 Identities = 229/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | ||| Sbjct 39605 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACACCC 39664 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA-GTAC 7575 | || | | | | |||||||| || ||||||||||| || || | | || | | Sbjct 39665 TCGTCGACAGTAAGAATGGAAACATCGAAGGTACCACCACCAAGATCGTAGACGATGATC 39724 Query 7576 GTTCGTATCG--TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | ||| | ||||| || || ||||| || | ||| || || || || Sbjct 39725 TGGCGCTCCGACTTGTCATCCTTCTTGTCCAGGCCGTAAGCCAGAGCGGCAGCGGTGGGC 39784 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || |||| | |||||| ||| || || ||||| || | || || || || || Sbjct 39785 TCGTTAACGACACGAAGGACGTTGAGACCGGCAATGGTGCCGGCGTCCTTGGTGGCGGCA 39844 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | ||||| ||||||||||| ||||| ||||| |||| || || ||| ||| Sbjct 39845 CGCTGAGCGTCGTTGAAGTAGGCCGGAACCGTGACGACGGCGTTGGTAACGGTCTCGCCG 39904 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || || || || | || ||||| ||| | |||||||| Sbjct 39905 AGGTAGTTCTCAGCAACCTCCTTCATCTTGCTCAGAACCAT 39945 >seq5 Length=234404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| |||| ||| || || || || || || | | ||| || ||| Sbjct 74206 CTTCTCGAGACCGTAAGCGAGAGCGGCGGCAGTGGGCTCGTTGACGACACGGAGGACGTT 74265 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || ||| | || | ||||| || || || || || || || ||||| |||||||| Sbjct 74266 CAAGCCGGAGATCTGACCGGCATCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGC 74325 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || || || |||| | |||| ||||| ||||| || | || ||| | || || Sbjct 74326 AGGGACAGTGACAACGGCGTTCTTGACGTTCTTGCCGAGGTAAGCCTCAGCGGTCTCCTT 74385 Query 7777 CATTTTGGTAAGAAC 7791 ||| ||| ||||| Sbjct 74386 CATCTTGCCGAGAAC 74400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127290222960