Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq664 181 2e-40 seq204 163 5e-35 >seq664 Length=348155 Score = 181 bits (200), Expect = 2e-40 Identities = 672/1031 (65%), Gaps = 39/1031 (4%) Strand=Plus/Plus Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 || |||||||||||||| || ||| ||||||| |||||||||||| ||| ||| Sbjct 292463 GCATGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAATCGAAA 292522 Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 ||||| || || | | ||| | ||||| || || | || || | ||||||| | | Sbjct 292523 GGCATGCGAAGAGCCAGGAAGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGGCGG 292582 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | | ||||| || || ||||| || || ||||| |||||| | ||| Sbjct 292583 TGACGCATGTTGCTCTTTCTGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATGATCTTG 292642 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || | |||| || || | |||||| ||||||| |||| | | Sbjct 292643 TTCAAGTTCTTCACGAGCACCTGGGTAACCTCGTGAAGCTTCT------TGAAGTCGTA- 292695 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 | | |||| | | | || || || | || || | ||||| ||| || Sbjct 292696 --GACACCGTTCTCAACG---TCGACGAAGGTCGGGAGAGCCAGCGAGGCCAAGTTGCAG 292750 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| || | || |||| | |||||| || |||||| || | Sbjct 292751 ACAGCGACCTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTGGAGCTGCGG 292810 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGAGCATAAA 221844 || || || |||| || || || |||||| ||| ||| | |||||||| ||||| || Sbjct 292811 ATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTG-CAGTGATCCTTGTACAGCATGAA 292869 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || ||||| | ||| ||| | ||||| || ||| || | |||| |||| | Sbjct 292870 GGGGTTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGCT-TCTGAGCGCGGA 292928 Query 221904 CCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAGAGCATGTCAAACT 221960 | ||| || | | || |||||| ||| || ||| | ||| ||||| | | |||| Sbjct 292929 CGGTC-TCACGGCCGCGACCCTC---CTTCTCGTACTGCTCGTAAAGAGCCT--CGAACT 292982 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAG-TGC 222019 || || || | || |||| || || ||| | ||| ||||| || ||||| ||| Sbjct 292983 CGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGC 293042 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 ||| | | ||| | | ||||||||| || || ||||| || || | || || || Sbjct 293043 C-GTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCG 293101 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA-AAACTCAAAAATGTC 222138 | | ||| |||||| ||||| ||| || | ||||| | ||||| || | ||| Sbjct 293102 CGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAAACTGAAGAC-GTC 293160 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATC 222198 |||||||| ||||| || |||| ||| | || || || ||||||||||||||||| || Sbjct 293161 GGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTC 293220 Query 222199 CACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 || | | ||| | |||| ||| |||||| | || | || |||||| | Sbjct 293221 AACGTAGCGC-GCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGC 293279 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT----GCCG 222313 |||||||||| |||||| ||| ||| | || | | || |||| ||| Sbjct 293280 CGTTGGTGCCAGCAATGTAGCTACCAGTGGCAC---GGATGC-GGTGAACATTGAGACCG 293335 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 || || || ||| || ||||||||||||||| ||||||| ||||| ||| || || Sbjct 293336 ATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCG 293395 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || |||||||| | || | || || ||||||| || ||||| |||| || | Sbjct 293396 ATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGACGCCAACTGAGGCTTGGGGGTTCCA 293455 Query 222434 GCGTTAAACAG 222444 ||||| ||||| Sbjct 293456 GCGTTGAACAG 293466 >seq204 Length=141573 Score = 163 bits (180), Expect = 5e-35 Identities = 343/515 (67%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| |||||||||||||||| ||||| || |||||| | | ||| | | || Sbjct 65705 CCCTGCATCAAGAGGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACC 65764 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| ||| | ||||| || || || ||||| ||||| |||||||| || || Sbjct 65765 TTTGCATCGCGTCTGATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC 65824 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| || || |||||||| || ||| ||||||||| Sbjct 65825 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTTATGCCCGGTCTCACCTTCTCCAACGAG 65884 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 ||||| | | || ||||| | |||| || |||||||||||||| | | || ||| Sbjct 65885 CTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGCCTGCCTGCTGTTCTCG---CAC 65941 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | || || | ||| | || | || ||||||| |||||||| || ||| Sbjct 65942 ATCAAGTCGAAGCCCAGCCCCGAGGCTGTTGAGAGGATCATCATCGAGGCTGTCGATATC 66001 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||||||||||| | | |||||||| || ||| Sbjct 66002 GAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACGCTC 66061 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 ||| |||| ||||| |||| || || |||| ||||| ||| | ||| || | | Sbjct 66062 ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGC-GCTCGGCAACAAGAA 66120 Query 26229 ACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAG 26286 ||||| |||| | ||||| |||||||| ||||| ||||| ||| | || ||| Sbjct 66121 GTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGTGGCAAG 66178 Query 26287 ACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||| || ||| | || || ||||| || Sbjct 66179 ACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 66213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || ||||||||||| Sbjct 65316 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 65375 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | ||| ||||| ||| || ||| | Sbjct 65376 TCCAAGGACCTCCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCC 65435 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || ||||| || ||||||||||| || |||| | Sbjct 65436 CACGTTCTCGCCTTCTTCGCCGCGTCGGATGGCATCGTGAACGAGAACCTCGTCGAGCGC 65495 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || |||||||| |||||||| Sbjct 65496 TTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 65548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836742271360