Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 100 8e-16 seq268 93.3 1e-13 >seq12 Length=433349 Score = 100 bits (110), Expect = 8e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| |||||||||||||||||||| ||||| || |||||||| ||||||||||| || Sbjct 169556 GCACCATGTGAAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCATCACGG 169497 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 || | ||| ||| | ||||| || |||||| Sbjct 169496 GCACGACCTTCGACGGGCTGGCGCGTGAGA 169467 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 252544 TCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTT 252603 || ||||| || | | ||| || | |||||||| ||||| ||| ||||||||| || Sbjct 168485 TCGTAATTCGTGAGACACACTCCCATTGCCTGCTTACCCATGGCAGACTGGTAAGTGTTA 168426 Query 252604 CTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTG 252663 | ||||| || |||| || ||||| |||||| || || || ||| ||||| || Sbjct 168425 CGAGGAGATTGGTTGTGATCTGGGAACGGAATGATGGAAGCGCAAATACCCAAGATCATG 168366 Query 252664 CTTGGGTGAATTTCACAGTGACTGTAATG 252692 ||||||||||| || || || |||| || Sbjct 168365 CTTGGGTGAATCTCGCAATGGGTGTATTG 168337 >seq268 Length=304159 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| ||| || | ||||| || Sbjct 163787 AGAATTTCCTTGAGACGCGGCACACCAAGCGTGACGTT---CTTCGAAGACACACCGGCG 163731 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| |||||||| | || || | ||||||||||| ||||| |||| | Sbjct 163730 AAATGGAAAGTGTTCAGAGTCATCTGCGTTGCAGGCTCACCAATGGACTGTGCGGCAAGC 163671 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||||||||| || Sbjct 163670 ACACCAACCATTTCTCCGGG 163651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804512781878