Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq664 138 1e-27 seq204 114 1e-20 seq101 111 1e-19 seq16 84.2 2e-11 >seq664 Length=348155 Score = 138 bits (152), Expect = 1e-27 Identities = 720/1135 (63%), Gaps = 23/1135 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| || ||||||||||| ||||||||||| | |||| || | || ||| | || Sbjct 292163 TTGACGACCTGAAACTCGCCAGCCAGCACACGGC-GAGAGTAGATGTTCGACGTGTACGG 292221 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| ||| |||| || ||| | || || || | ||||| |||||| || || Sbjct 292222 CTCGAAACACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGTGCGAC 292281 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 | || || || || | ||||| | | || | |||||| | | ||||||||| Sbjct 292282 GAGCAGAGAGTTGCGGATACCGTGCTGAGCAATCTCAGCCTTCACGCTGTCCCAGTCCCA 292341 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | || | | |||||||||||||||||| || | || || ||| ||| Sbjct 292342 AAGGTCG--GTCGGTGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTGAGAGGCAGGA 292399 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||||| ||| || |||| || | | ||| || | ||| || || Sbjct 292400 CTGCCCTGGAAGGTCTCGTAGGGACCATGGAGCTTGGCAAGATCAATCGAGGCAGTGATG 292459 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 | | ||| ||| ||||| ||| || || |||| || | || || | ||| Sbjct 292460 GATGCATGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTGCTTGGCCTCGGGGGAATCG 292519 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||||| || ||| || ||||||||||| | ||| | || ||| || |||| || Sbjct 292520 AAAGGCATGCGAAGAGCCAGGAAGGCATCGGCAAGACCGTTGACACCCACTGCGATGGGG 292579 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAAT 147368 || || |||||| | || |||| | || ||||||||| || || || Sbjct 292580 CGGTGACGCATGTTGCTCTTTCTGGC-CTCGGGCACCGGGTAGTGGTTGATGTCGATGAT 292638 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||| | ||| ||| | || | || | | || |||| ||| || || Sbjct 292639 CTTGTTCAAGTTCTTCACGAGCACCTGGGTAACCTCGTGAAGCTTCTTGAAGTCGTAGAC 292698 Query 147429 CCCGTCTTCGACACGTACGCATTGGTTC--ACGGCGATAGACGCCAGATTGCAGACGGCC 147486 |||| || || ||| | ||| | || | || |||| |||||||| || Sbjct 292699 ACCGTTCTCAACGTCGACGAA--GGTCGGGAGAGCCAGCGAGGCCAAGTTGCAGACAGCG 292756 Query 147487 GTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| |||| | | |||||| ||||| ||| ||| |||||| || || Sbjct 292757 ACCTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAAAGGTTGGAGCTGCGGATCGTA 292816 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 || | || | || ||||| || || ||||| || ||| | |||||| | || Sbjct 292817 CCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAGGGGTTA 292876 Query 147607 CCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 ||||||||||| || | || | || ||| | || | ||| || || || | Sbjct 292877 CCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGC---TTCTGAGCGCGGACGGTC 292933 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 | || ||| ||||| || |||||| ||||||| | ||| |||||||| || || Sbjct 292934 TCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGCCTCGAACTCGTCTCCATAA 292993 Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 ||| || || || || |||| | || ||||| || | ||| || ||| | | Sbjct 292994 ACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCG 293053 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA 147843 || ||| ||| || ||||| || | ||| || ||||| | || ||||| || | Sbjct 293054 ACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAACAGGTCGCGAGCCCGGACT 293113 Query 147844 TCCTCGGCGCCCATGTTGCGTTTCAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGG 147902 ||||| ||| ||| | | || || ||| | || ||| |||||||||||| || Sbjct 293114 TCCTCCTTGCCGTGGTT-CTTGCGAAGATCAAGGAAACTGAAGACGTCGGCGTGCCATGG 293172 Query 147903 TTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCAC 147959 || | ||||| ||| | ||||| |||||| || |||||||| || | |||| | Sbjct 293173 CTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTAGCGCGC 293232 Query 147960 CATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 ||||||| | ||||| | |||||| || |||| | ||||||||||||| Sbjct 293233 AGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCTAGTGCCGTTGGTG 293287 >seq204 Length=141573 Score = 114 bits (126), Expect = 1e-20 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG-CACA 47116 ||||| |||||||| | || | |||||||||||||| | || |||||||| | ||| Sbjct 65999 ATCGAGAAGGAGTTCCTGACGGATGCGCTGCCCGTCGCTCTTCTCGGCATGAATGCCACG 66058 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC- 47175 || |||||| | || || ||||| || ||||| || ||| ||||| |||||| |||| Sbjct 66059 CTC-ATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTGGTGGCGCTCGG-CAACA 66116 Query 47176 CGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCA 47235 ||| || | || || || || || || || ||| | |||||||||||| |||| Sbjct 66117 AGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAGTGGCA 66176 Query 47236 AAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | ||||| || |||||||| || || || || || Sbjct 66177 AGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 66210 >seq101 Length=66550 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 147685 TCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC 147744 |||||| ||||||| | | || |||||| | ||||||| ||| | || ||||||||| Sbjct 6604 TCGTACTGCTCGTAGAGCGCGTCGAACTCGCCCGCGTAGCAGTCGACGAGCCCGGGACAC 6545 Query 147745 TGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCC 147804 | ||| |||||||||| ||| | ||||| || || || ||||| ||||| ||| Sbjct 6544 TCGGCCGGGCACATCAGCGTCCAGTCGCCGTCCTGGTCGACCCGGCGCATGAACAGGTCC 6485 Query 147805 GGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA----ATCCTCGGCGCCCATGTT 147860 ||||||||||||||||| || ||||| || ||| ||||| | |||| | | Sbjct 6484 GGCACCCACAGCGCGTAGGCCAGGTCGCGTGC-CCGCAGCTCATCCTTGCCGCC---GCT 6429 Query 147861 GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACG 147915 ||| || || || | | | ||| ||||||||||| || || | ||||||| Sbjct 6428 GCGGCCCAGGTTGAGGAAGTCAAAGACATCGGCGTGCCACGGCTCCAGGTAGACG 6374 >seq16 Length=352857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| || ||| || |||||| ||||| || |||| Sbjct 16657 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCG 16598 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| | ||||| ||||| ||||| |||||||| ||||| Sbjct 16597 AAGATCAAGCGCTGCTGATCCGGAGGAATGCCTTCCTTATC 16557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| ||||| ||||||||||| | || Sbjct 17424 ACGCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAGAGCGT 17365 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| ||||| | |||| |||||||| ||||| || || || || Sbjct 17364 GCGCCCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCCGGCGGGATACC 17305 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || |||| | || | || |||| | || || |||| Sbjct 17304 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATCGTGTCGGAAGATTCAACCTCGAG 17245 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| ||||||||| Sbjct 17244 CGTGATAGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCATG 17202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607065397840