Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq204 89.7 6e-13 seq13 82.4 1e-10 >seq204 Length=141573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 278/424 (66%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||||||||| ||| || |||||| ||||| Sbjct 66210 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACTGAGCGAAATGTTCTCCATG 66151 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | ||||| | | | || | | | | || || Sbjct 66150 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTGCCGAGCGCCACC------AGC 66097 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG- 122543 || || |||| || |||| ||||||| | |||| | | ||||| |||| || Sbjct 66096 AGGCGGTCCGCGACGAACTCGATGTACTGGCACATGAGCGTGGCATTCATGCCGAGAAGA 66037 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 | || || || || ||| | |||| | ||||| || || || ||||| | | ||| Sbjct 66036 GCGACG-GGCAGCGCATCCGTCAGGAACTCCTTCTCGATATCGACAGCCTCGATGATGAT 65978 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAA 122662 | | || |||| |||| || || | || | ||| ||| ||||| Sbjct 65977 CCTCTCAACAGCCTCGGGGCTGGG-CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCAA 65919 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | |||||||| |||||||| || || || |||||| ||||| |||| Sbjct 65918 AGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAGGTGAGACCGGGCA 65859 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 65858 TAAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAGATACCCT 65799 Query 122783 CCAC 122786 | || Sbjct 65798 CGAC 65795 >seq13 Length=394191 Score = 82.4 bits (90), Expect = 1e-10 Identities = 218/327 (67%), Gaps = 21/327 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||||||||| || | || || | || ||||||||| || || | Sbjct 238056 AACCCATCCATCTCGGTCAGAATCTGGTTCAGCGTGCTTTCTCTCTCGTCGTTGCC---- 238111 Query 11600 ATACCACCA--GCACTGCGTTGCT-------TGCCCACCGCATCAATCTCATCAATGAAG 11650 ||||||| || ||| | ||| | || | || || || ||||| ||||| Sbjct 238112 --ACCACCAAAGCTTTGCTTGGCTCTTGACTTTCCGATGGCGTCGATTTCATCGATGAAA 238169 Query 11651 ACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 | || || || || | ||| || || | | || |||||||| || || | ||| Sbjct 238170 ATGATGCAAGGCGTGCTCTTC-CGCGCAGTGGCGAACAGATCGCGTACTCTCGAAGGACC 238228 Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767 ||||| |||||||||||||| || | | | || || |||| || |||||| || Sbjct 238229 AACACCGACAAACATCTCCACGAACTCGGAACCGCTGA-CACT-GAAGAATGGCACGCCA 238286 Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827 |||||||| || |||| || ||||| ||||| || ||||| || ||| | ||| Sbjct 238287 GATTCACCGGCAGTGGCCTTTGCAAGGAGCGTCTTACCGGTACCGGGAGGACCAGAAAGA 238346 Query 11828 AGGGCGCCTCGGGGGATCTTGGCACCA 11854 | ||||| || ||||| || |||||| Sbjct 238347 ATAGCGCCACGCGGGATTTTCGCACCA 238373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026551822400