Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq664 111 2e-19 seq13 102 1e-16 >seq664 Length=348155 Score = 111 bits (122), Expect = 2e-19 Identities = 471/738 (64%), Gaps = 7/738 (1%) Strand=Plus/Plus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || |||| || || |||| | |||||| |||||||||| | || || ||| Sbjct 292736 GAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGTGTACTCGACGATCTCGCAGCAA 292795 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || || || || | ||||||||| || ||| ||| || |||| Sbjct 292796 AGGTTGGAGCTGCGGATCGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCC 292855 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| |||||| | || | || ||||| |||| || |||||| || | ||| | | Sbjct 292856 TTGTACAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGAATGGCGTACCAAAGC 292915 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || | ||| | || || | | | || ||||| | |||||||| ||| || || Sbjct 292916 TTCTG-AGCGCGGACGGTCTCACGGCCGCGACCCTCCTTCTCGTACTGCTCGTAAAGAGC 292974 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || ||||| || || | |||| ||||| || || | ||||| | ||| | Sbjct 292975 CTCGAACTCGTCTCCATAAACATCTGCCAGCCCCGGGCACTCGTTGGGGCACATGAGGGT 293034 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || || ||| || || ||||||||||| || || |||||||| || |||| Sbjct 293035 CCAGGTGCCGTTCTGCTCGACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCGTAGAA 293094 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || || ||| || |||| || | || || || || | || | || | Sbjct 293095 CAGGTCGCGAGCCCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAAACTGAA 293154 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGC 119191 || || |||||||| || || ||||| | |||| | ||| ||| ||| | Sbjct 293155 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACC 293214 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | ||||||| ||| | || |||||||| ||||| | || | | Sbjct 293215 CTGGTCAACGTAGCGCGCAGTGTTGTTGTAGACGCGAAGCATGGGAATCAAGCCGTTGCT 293274 Query 119252 TTGGCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 ||| || || || ||| | || | |||| | || ||| | | | || Sbjct 293275 AGTGCCGTTGGTGCCAGCAATGTAGCTAC-CAGTGGCACGGATGCGGTGAACATTGAGAC 293333 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || || || ||| ||||| ||||| | |||| || ||||||| || | Sbjct 293334 CGATGCCTCCAGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCGT 293393 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 |||| || |||| | ||||||||||||| || || |||||| |||| || | Sbjct 293394 CGATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGACGCCAACTGAGGCTTGGGGGTTC 293453 Query 119431 CAGCGTTGAAGAGAGTTG 119448 |||||||||| |||| || Sbjct 293454 CAGCGTTGAACAGAGCTG 293471 >seq13 Length=394191 Score = 102 bits (112), Expect = 1e-16 Identities = 169/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAA 14291 ||| |||| |||||| |||||||||||||||| ||| || || || | ||| || ||| Sbjct 238139 CTTTCCGATGGCGTCGATTTCATCGATGAAAATGATGCAAGGCGTGCTCTTC-CGCGCAG 238197 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || | ||| || |||||| | ||| ||||| |||||||||||||| || | || Sbjct 238198 TGGCGAACAGATCGCGTACTCTCGAAGGACCAACACCGACAAACATCTCCACGAACTCGG 238257 Query 14352 --CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | || | ||| | || ||| || ||| ||||||||| || |||| || ||||| Sbjct 238258 AACCGCTG-ACACT-GAAGAATGGCACGCCAGATTCACCGGCAGTGGCCTTTGCAAGGAG 238315 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 ||||| || || || || || | |||| || ||||| ||||| | |||||| Sbjct 238316 CGTCTTACCGGTACCGGGAGGACCAGAAAGAATAGCGCCACGCGGGATTTTCGCACCA 238373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429835074640