Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplodia_20seriata_20[genbank_20GCA_5F001006355.1_202015-05-13] 694 sequences; 37,120,944 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq16 120 9e-22 seq224 107 6e-18 seq268 87.8 5e-12 >seq16 Length=352857 Score = 120 bits (132), Expect = 9e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || |||||||| || ||||| || ||||| || || || Sbjct 16694 CATACCACCGCGGAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 16635 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || || || ||||| | || |||||||| || Sbjct 16634 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCCGG 16575 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| |||||||| || || ||| || || || || || | || || | | Sbjct 16574 AGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGGACGACT 16516 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| ||||| Sbjct 16515 CGACCTCAAGGGTGATGGTCTTGCCGGT 16488 Score = 98.7 bits (108), Expect = 3e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||| ||||| || || || || | Sbjct 16981 TTTGCATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 16922 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| ||||| | || ||||| | Sbjct 16921 AGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 16862 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | || || | Sbjct 16861 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGAGG 16802 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || ||||| || | ||||| || || | ||| Sbjct 16801 ACTCGACCTCAAGGGTGATGGTCTTGCCAGTCACTGT 16765 >seq224 Length=463250 Score = 107 bits (118), Expect = 6e-18 Identities = 259/392 (66%), Gaps = 0/392 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || ||||| || || ||||| | || |||| ||| | |||||| | || | Sbjct 427 CCTGAGGAAATCTCTTCCATGGTCCTGACCAAGATGAGGGAGACTGCTGAGTCGTACCTC 368 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | |||||| |||| || || ||||| || || || ||||||| Sbjct 367 GGTGGCACCGTCAACAACGCTGTTGTTACCGTCCCCGCCTACTTCAACGACTCCCAGCGC 308 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || ||| || || | || || || | || || || || Sbjct 307 CAGGCTACCAAGGATGCCGGTCTCATCGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 248 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || || || || | | | || || | Sbjct 247 CCTACTGCCGCTGCCATCGCCTACGGTCTCGACAAGAAGGCTACTGGTGAGCGCAACGTC 188 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || ||| | || ||||||||||| ||||| || || || || |||| || || Sbjct 187 ATGATCTTCGATCTTGGCGGTGGTACTTTCGATGTTTCCCTCCTCACCATTGAGGAAGGT 128 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | ||||| |||||||| || || ||||| || || || || || Sbjct 127 ATCTTCGAGGTCAAGTCCACTGCCGGTGATACTCACCTGGGTGGCGAGGACTTCGACAAC 68 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAA 349923 |||||||| || || ||||| || || || Sbjct 67 CGTCTCGTCAACCACTTCGTTAACGACTTCAA 36 >seq268 Length=304159 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || || ||| || || | ||||| || || |||||||| || Sbjct 163772 CGCGGCACACCAAGCGTGACGTTC---TTCGAAGACACACCGGCGAAATGGAAAGTGTTC 163716 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || || | ||||||||||| ||||| || |||| || |||||||||||| Sbjct 163715 AGAGTCATCTGCGTTGCAGGCTCACCAATGGACTGTGCGGCAAGCACACCAACCATTTCT 163656 Query 377578 CCAGGATTGACAATAGC 377594 || || |||| || || Sbjct 163655 CCGGGGCTGACGATCGC 163639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515240926547282